Error taxonomy_lookup_embeded.pl
Opened this issue · 5 comments
Hello,
I have this error when i run taxonomy_lookup_embeded.pl
DBD::SQLite::db selectrow_arrayref failed: no such table: gi_taxid at ./taxonomy_lookup_embeded.pl
Have you an idea to fix the problem ?
Thanks a lot
This is most probably because NCBI has removed GI numbers from NT database. If you have downloaded NT database after september 2016 you are likely to face this problem.
Please see #26
Hi,
Thanks a lot,
Guillaume
2016-10-25 8:52 GMT+02:00 raeece notifications@github.com:
This is most probably because NCBI has removed GI numbers from NT
database. If you have downloaded NT database after september 2016 you are
likely to face this problem.
Please see #26 #26—
You are receiving this because you authored the thread.
Reply to this email directly, view it on GitHub
#27 (comment), or mute
the thread
https://github.com/notifications/unsubscribe-auth/AVxAYJ6OB55S6q-7VvAh_e3Jm7n3qRYTks5q3adKgaJpZM4KWOCr
.
Hi,
Have you any solution ?
NCBI don't provide previous database. Can you provide me an old release via
ftp ?
Thanks a lot.
Guillaume G.
2016-10-25 19:03 GMT+02:00 Gui GuiGui guipagui@gmail.com:
Hi,
Thanks a lot,
Guillaume2016-10-25 8:52 GMT+02:00 raeece notifications@github.com:
This is most probably because NCBI has removed GI numbers from NT
database. If you have downloaded NT database after september 2016 you are
likely to face this problem.
Please see #26 #26—
You are receiving this because you authored the thread.
Reply to this email directly, view it on GitHub
#27 (comment), or mute
the thread
https://github.com/notifications/unsubscribe-auth/AVxAYJ6OB55S6q-7VvAh_e3Jm7n3qRYTks5q3adKgaJpZM4KWOCr
.
Hi,
I don't have the old release. I am waiting for the SURPI developers to provide a fix at the earliest.
Hi
Did anyone try to solve this issue?
Thanks