Pinned Repositories
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
boto
Python interface to Amazon Web Services
CellProfiler
CellProfiler is open-source cellular image analysis software.
homebrew
The missing package manager for OS X.
intermine-ws-python
The InterMine python webservice
libjpeg-turbo
git-svn mirror of libjpeg-turbo
matplotlib-toys
OMERO matplotlib toy scripts
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
pychrm
chris-allan's Repositories
chris-allan/openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
chris-allan/CellProfiler
CellProfiler is open-source cellular image analysis software.
chris-allan/bioformats2raw
Bio-Formats whole slide imaging to raw format converter
chris-allan/isyntax2raw
iSyntax to raw format converter
chris-allan/jxrlib
chris-allan/jzarr
A Java implementation of the API offered by the Python zarr package
chris-allan/n5
Not HDF5
chris-allan/NGFF-Converter
NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
chris-allan/ome-documentation
Sphinx-based documentation for the Open Microscopy Environment
chris-allan/ome-types
native Python dataclasses for the OME data model
chris-allan/omero-blitz
Gradle project containing Ice remoting code for OMERO
chris-allan/omero-certificates
OMERO server certificate management plugin
chris-allan/omero-common
Gradle project containing common utilities for OMERO
chris-allan/omero-ldaptool
Command line tool for working with OMERO and LDAP
chris-allan/omero-model
Gradle project for generating model jar for OMERO
chris-allan/omero-ms-core
OMERO Vert.x microservice core
chris-allan/omero-ms-image-region
OMERO image region Vert.x asynchronous microservice server
chris-allan/omero-ms-thumbnail
OMERO thumbnail Vert.x asynchronous microservice server
chris-allan/omero-pc-steward
OMERO Process Container Steward
chris-allan/omero-py
Python project containing Ice remoting code for OMERO
chris-allan/omero-server
Gradle project containing main server logic for OMERO
chris-allan/omero-web
Django-based OMERO.web client
chris-allan/omero-zarr-pixel-buffer
OMERO Zarr Pixel Buffer Implementation
chris-allan/raw2ometiff
Raw format to OME-TIFF converter
chris-allan/scaling-sandbox
chris-allan/tiledb-java-torture
TileDB Java torture test
chris-allan/www.openmicroscopy.org
OME main website
chris-allan/zeroc-ice-py-linux-x86_64
Builds ZeroC Ice Python manylinux2014 wheel packages for Linux x86_64.
chris-allan/zeroc-ice-py-macos-universal2
Builds Zeroc Ice Python wheel packages for macOS universal2 (x86_64 + arm64)
chris-allan/zeroc-ice-py-macos-x86_64
Builds Zeroc Ice Python wheel packages for macOS x86_64