christine-liu

cDNA_Cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

complex-upset

A library for creating complex UpSet plots with ggplot2 geoms

exonjunction

R script for visualizing exon-exon junctions in genomic sequencing reads

isoSeQL

Toolkit for comparing multiple Iso-Seq runs analyzed through SQANTI3

plot1cell

somaticCNVpipeline

Pipeline for somatic CNV detection from single-cell whole-genome sequencing data of non-cancerous mouse or human tissue.

SQANTI3

Repository of SQANTI3 tool for Quality Control of Long-Read Defined Transcriptomes

varccs

Variant Calling Tool for Circular Consensus Sequencing

pbbioconda

PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

christine-liu/exonjunction

R script for visualizing exon-exon junctions in genomic sequencing reads

christine-liu/isoSeQL

Toolkit for comparing multiple Iso-Seq runs analyzed through SQANTI3

christine-liu/cDNA_Cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

christine-liu/complex-upset

A library for creating complex UpSet plots with ggplot2 geoms

christine-liu/plot1cell

christine-liu/somaticCNVpipeline

Pipeline for somatic CNV detection from single-cell whole-genome sequencing data of non-cancerous mouse or human tissue.

christine-liu/SQANTI3

Repository of SQANTI3 tool for Quality Control of Long-Read Defined Transcriptomes

christine-liu/varccs

Variant Calling Tool for Circular Consensus Sequencing