chuan-wang
Bioinformatician at NGI, SciLifeLab in Stockholm
National Genomics Infrastructure, Science for Life LaboratoryStockholm
Pinned Repositories
bravo-protocols
VWorks protocols and other files for the Agilent NGS Workstations at the Genomics facility at SciLifeLab.
charon
Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.
faq
Nextflow frequently asked questions
flowcell_parser
Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
genologics
Python interface to the GenoLogics LIMS server via its REST API.
genologics_sql
Python interface for the Genologics Postgres database.
lims_dashboard
NGI-ChIPseq
Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm
NGI-smRNAseq
Nextflow Small RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Samplesheet_converter
For converting Illumina Samplesheet that contains Chromium 10X indexes
chuan-wang's Repositories
chuan-wang/NGI-ChIPseq
Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm
chuan-wang/lims_dashboard
chuan-wang/Samplesheet_converter
For converting Illumina Samplesheet that contains Chromium 10X indexes
chuan-wang/bravo-protocols
VWorks protocols and other files for the Agilent NGS Workstations at the Genomics facility at SciLifeLab.
chuan-wang/charon
Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.
chuan-wang/faq
Nextflow frequently asked questions
chuan-wang/flowcell_parser
Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
chuan-wang/genologics
Python interface to the GenoLogics LIMS server via its REST API.
chuan-wang/genologics_sql
Python interface for the Genologics Postgres database.
chuan-wang/NGI-smRNAseq
Nextflow Small RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
chuan-wang/genomics-status
Tornado server for tracking samples at NGI Stockholm
chuan-wang/LabProtocols
The Environmental Genomic Group also does lab work. This is how we do it.
chuan-wang/LIMS2DB
chuan-wang/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
chuan-wang/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
chuan-wang/NGI-RNAseq
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
chuan-wang/ngi_pipeline
Code driving the production pipeline at SciLifeLab
chuan-wang/ngi_reports
Code to generate reports for use by the NGI in SciLifeLab
chuan-wang/scilifelab_epps
A collection of Genologics Clarity LIMS EPPs used at Scilifelab.
chuan-wang/standalone_scripts
Repository to store standalone scripts that do not belong to any bigger package or repository
chuan-wang/statusdb
Python wrappers and methods to work with CouchDB's instance at NGI Stockholm
chuan-wang/TACA
Tool for the Automation of Cleanup and Analyses
chuan-wang/taca-ngi-pipeline
A TACA plugin adding functionality relevant for the ngi_pipeline
chuan-wang/test-datasets
Test data to be used for automated testing with the nf-core pipelines