chunjie-sam-liu

Genetics & Bioinformatics. Computational and Genomic Medicine Center, @Xinglab

Children's Hospital of Philadelphia (CHOP)Philadelphia, U.S.

Pinned Repositories

awesome-crispr-resource
awesome crispr resource, including guide RNA design, data analysis
2 3 11
EVAtlas-portal
Extracellular Vesicle Atlas data portal
Language:TypeScript1 3 00
GEDS
GEDS: Gene expression display server
Language:R2 3 20
GSCA
An integrated genomic and immunogenomic web-based platform for gene set cancer research
Language:TypeScript1 3 00
GSCALite
GSCALite: Gene set for cancer analysis
Language:R23 7 114
leng1r
Language:HTML4 3 03
miRNASNP-v3
Update miRNA SNP database
Language:Shell3 3 01
pipeline-exome
whole exome sequencing analysis pipeline
Language:C++2 3 14
pipeline-resequencing
genome_resequencing_pipeline
Language:C++2 3 03
useful-scripts
common useful script
Language:Shell32 9 633

chunjie-sam-liu's Repositories

chunjie-sam-liu/useful-scripts
common useful script
Language:Shell32 9 633
chunjie-sam-liu/GSCALite
GSCALite: Gene set for cancer analysis
Language:R23 7 114
chunjie-sam-liu/miRNASNP-v3
Update miRNA SNP database
Language:Shell3 3 01
chunjie-sam-liu/GEDS
GEDS: Gene expression display server
Language:R2 3 20
chunjie-sam-liu/pipeline-exome
whole exome sequencing analysis pipeline
Language:C++2 3 14
chunjie-sam-liu/EVAtlas-portal
Extracellular Vesicle Atlas data portal
Language:TypeScript1 3 00
chunjie-sam-liu/GSCA
An integrated genomic and immunogenomic web-based platform for gene set cancer research
Language:TypeScript1 3 00
chunjie-sam-liu/Immune-checkpoint-blockade
Mining immune checkpoint blockade genomic and transcriptome signatures
Language:R1 2 00
chunjie-sam-liu/lncRInter
lncRNA interaction
Language:PHP1 3 10
chunjie-sam-liu/Deeplatelet
TEP prognosis
Language:Jupyter Notebook00
chunjie-sam-liu/angular-heroes
New angular
Language:TypeScript3 0
chunjie-sam-liu/chunjie-sam-liu
Language:JavaScript3 0
chunjie-sam-liu/chunjie-sam-liu.github.io
Personal blog
Language:HTML3 0
chunjie-sam-liu/chunjie-sam-liu.life
Personal Blog
Language:HTML3 1
chunjie-sam-liu/jrocker-base
Jrocker base image
Language:Dockerfile2 0
chunjie-sam-liu/m6a
m6a
Language:R3 1
chunjie-sam-liu/macr
MAC R scripts from here.
Language:HTML3 0
chunjie-sam-liu/pipeline-miRNA
miRNA pipeline
Language:Perl3 13
chunjie-sam-liu/qc-wdl
QC for FASTQ and BAM files
Language:R2 01
chunjie-sam-liu/rmats-turbo
1
chunjie-sam-liu/rmats-turbo-nf
Portable Aternative Splicing Detection Workflow with rMATS turbo
Language:Nextflow
chunjie-sam-liu/rmats-turbo-wdl
rmats-turbo-wdl
Language:WDL3 0
chunjie-sam-liu/rMATS-turbo_NP
Language:Jupyter Notebook
chunjie-sam-liu/rna-seq-quant-wdl
short reads for string tie
Language:WDL
chunjie-sam-liu/safe-server
Web server security
chunjie-sam-liu/sc-type
chunjie-sam-liu/SNORic
snoRNA in cancer
Language:JavaScript3 13
chunjie-sam-liu/tensorqtl
Ultrafast GPU-enabled QTL mapper
Language:Python1 0
chunjie-sam-liu/tep-fastq-to-count
Old version fastq to count
Language:Shell3 0
chunjie-sam-liu/TMwR
Code and content for "Tidy Modeling with R"
Language:R2 0