churchmanlab/genewalk

Issues

• gzip.BadGzipFile: Not a gzipped file (b'<!') | pandas.errors.EmptyDataError: No columns to parse from file

  #75 opened 4 months ago by Cameron-Nguyen1
  1

• extending to KEGG

  #73 opened 6 months ago by lli-rice
  1

• Problem with genewalk

  #70 opened a year ago by damhanalla
  0

• AttributeError: module 'typing' has no attribute 'NoReturn

  #68 opened 3 years ago by ri23
  3

• Trouble Using GeneWalk

  #44 opened 4 years ago by SinjaFan
  2

• GO annotations file comment rows have changed

  #60 opened 4 years ago by bgyori
  1

• Criteria for barplot output

  #33 opened 4 years ago by npokorzynski
  8

• Bioconda integration

  #4 opened 4 years ago by chrarnold
  6

• INDRA script generation

  #42 opened 4 years ago by xandmac
  2

• No regulators identified?

  #37 opened 4 years ago by npokorzynski
  4

• Illustration of the GeneWalk network

  #29 opened 4 years ago by izu0421
  4

• Rat genome

  #27 opened 4 years ago by amitpande74
  1

• GO Terms

  #45 opened 4 years ago by npokorzynski
  1

• Code for regulator/moonlighter plots

  #49 opened 4 years ago by npokorzynski
  4

• Mouse ids are not working with genewalk?

  #48 opened 4 years ago by Anara2018
  1

• Error when calling word2vec: unexpected keyword argument 'size'

  #46 opened 4 years ago by ri23
  2

• Installation failed.

  #28 opened 4 years ago by alhafidzhamdan
  6

• IndexError: list index out of range

  #34 opened 4 years ago by eskederks
  2

• Install issue

  #31 opened 4 years ago by npokorzynski
  8

• AttributeError: type object 'object' has no attribute 'dtype'

  #32 opened 4 years ago by vertesy
  2

• network source file

  #30 opened 4 years ago by amitpande74
  4

• rdflib=4.2.2 and python 3 version conflict

  #26 opened 4 years ago by tmargus
  2

• ML

  #25 opened 4 years ago by Vashar20
  1

• Error while downloading resources - PathwayCommons11.All.hgnc.sif.gz

  #16 opened 5 years ago by leiendeckerlu
  7

• ensembl_id

  #17 opened 5 years ago by marttine
  1

• compiling the resource folder - error

  #15 opened 5 years ago by jrconner16
  8

• Visualization of the results

  #10 opened 5 years ago by chrarnold
  7

• Importing the numpy c-extensions failed.

  #14 opened 5 years ago by gitpycode
  0

• Ensembl IDs with dots cause problems

  #12 opened 5 years ago by chrarnold
  4

• KeyError: 'ensembl_id'

  #8 opened 5 years ago by chrarnold
  3

• version argument missing

  #6 opened 5 years ago by chrarnold
  0

• ENSEMBL IDs

  #3 opened 5 years ago by chrarnold
  4

• Id_type for mouse genes

  #1 opened 5 years ago by whelena
  9

• TypeError: Input graph is not a networkx graph type

  #2 opened 5 years ago by pax6pax6
  2