cinnetcrash
M.Sc. Microbiologist, Veterinarian, Molecular Microbiology, Bioinformatics, Data Analytics, Public Health, SARS-CoV-2
Turkey
Pinned Repositories
Ankara_HSGM
Reference-based consensus creation - SARS-CoV-2
bioconda-recipes
Conda recipes for the bioconda channel.
Biyoinformatik_TR
Bu sayfada Biyoinformatik analizler ile ilgili eğitim materyalleri bulunmaktadır.
cinnetcrash.github.io
This repo contains my training materials for microbial bioinformatics
consensus_printer
COVID19_Inhouse_Script
This repo contains in-house scripts for Illumina and Nanopore reads
GelindonyAMR
AMR-Analysis-Pipeline
Lymra-Ont
This software can be used to analyse Ont-Monkeypox data.
oneliners
Useful bash one-liners for bioinformatics.
ont-monkeypox
Snakemake workflow for Monkeypox genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
cinnetcrash's Repositories
cinnetcrash/Biyoinformatik_TR
Bu sayfada Biyoinformatik analizler ile ilgili eğitim materyalleri bulunmaktadır.
cinnetcrash/cinnetcrash.github.io
This repo contains my training materials for microbial bioinformatics
cinnetcrash/oneliners
Useful bash one-liners for bioinformatics.
cinnetcrash/Ankara_HSGM
Reference-based consensus creation - SARS-CoV-2
cinnetcrash/bioconda-recipes
Conda recipes for the bioconda channel.
cinnetcrash/consensus_printer
cinnetcrash/COVID19_Inhouse_Script
This repo contains in-house scripts for Illumina and Nanopore reads
cinnetcrash/fieldbioinformatics
The ARTIC field bioinformatics pipeline
cinnetcrash/GelindonyAMR
AMR-Analysis-Pipeline
cinnetcrash/GISAID_HSGM
These codes are to generate an automated code for uploading SARS-CoV-2 genomic sequences to GISAID via a FASTQ file and an EXCEL file for Türkiye
cinnetcrash/kraken2_Illumina
Taxonomic classification of reads and abundance estimation of species in metagenomic samples
cinnetcrash/Lymra-Ont
This software can be used to analyse Ont-Monkeypox data.
cinnetcrash/mutation_scanner
cinnetcrash/ont-monkeypox
Snakemake workflow for Monkeypox genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
cinnetcrash/python_kodlari
cinnetcrash/turkey_epi_data
Türkiye'nin filogenetik ağaç profili çalışmaları
cinnetcrash/WGS_Training
cinnetcrash/patomatic
cinnetcrash/qiime2-session
Material for Trainning session with QIIME2 for Microbial diversity analysis using 16S rRNA gene
cinnetcrash/viral_analiz
Assembly and intrahost/low-frequency variant calling for viral samples