cinnetcrash

cinnetcrash's Stars

• Significant-Gravitas/AutoGPT

  AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

  Language:Python171k1.5k3.1k44.8k

• sib-swiss/training-collection

  Collection of bioinformatics training materials

  Language:Python9934568184

• openjournals/joss-reviews

  Reviews for the Journal of Open Source Software

  7311017.6k39

• BilgisayarKavramlari/Programlamaya-Giris

  Her Dil için Programlamaya Giriş Antreman Soruları ve Çözümleri

  Language:C#52015722895

• malonge/RagTag

  Tools for fast and flexible genome assembly scaffolding and improvement

  Language:Python485818850

• bactopia/bactopia

  A flexible pipeline for complete analysis of bacterial genomes

  Language:Nextflow4251452873

• BenLangmead/ads1-notebooks

  Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

  376553367

• BenLangmead/ads1-slides

  Slides for Algorithms for DNA Sequencing Coursera class

  320351222

• alastairrushworth/free-data-science

  🛠️ 🌐 Thematic list of high-quality data science resources

  Language:R29319252

• StaPH-B/docker-builds

  :package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

  Language:Dockerfile19912368126

• AllTheBacteria/AllTheBacteria

  Follow up to Grace Blackwell's 661k dataset, for 2023

  Language:Python8624465

• almiheenko/AGB

  Interactive visualization of assembly graphs

  Language:JavaScript807127

• ythuang0522/homopolish

  High-quality Nanopore-only genome polisher

  Language:Python6963912

• GenSpectrum/cov-spectrum-website

  A web platform to detect and analyze variants of SARS-CoV-2

  Language:TypeScript61553314

• loculus-project/loculus

  An open-source software package to power microbial genomic databases

  Language:TypeScript4251.2k2

• jonas-fuchs/varVAMP

  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

  Language:Python34679

• pathoplexus/pathoplexus

  An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.

  Language:MDX295592

• CMU-SAFARI/FastRemap

  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: https://arxiv.org/pdf/2201.06255.pdf

  Language:C++26622

• peterk87/nf-flu

  Influenza genome analysis Nextflow workflow

  Language:Nextflow2371420

• elixir-europe/biohackathon-projects-2022

  Project code for BioHackathon Europe 2022.

  Language:HTML20136226

• zheminzhou/SPARSE

  Strain Prediction and Analysis with Representative SEquence

  Language:C++18684

• agmcarthur/Biochem-3BP3

  Lectures and Lab Exercises for Biochem 3BP3 Practical Bioinformatics for the Genomics Era

  Language:Batchfile14406

• aineniamh/squirrel

  Language:Python104247

• WHO-Collaboratory/collaboratory-mpox-genomics-phylomasking

  6410

• genomicsITER/monkeypox

  Monkeypox public repository

  4206

• pathoplexus/curation_reports

  Curation reports for Pathoplexus

  40

• rki-mf1/CoVpipe2

  SARS-CoV-2 genome reconstruction for Illumina data in Nextflow

  Language:Nextflow43311

• WHO-Collaboratory/collaboratory-mpox-genomics-community

  4402

• BioWilko/abphm_hackathon_metagenomics

  Language:Python1100

• cinnetcrash/cinnetcrash.github.io

  This repo contains my training materials for microbial bioinformatics

  Language:HTML1200