Pinned Repositories
cfrnet
Counterfactual Regression
co-llm
Co-LLM: Learning to Decode Collaboratively with Multiple Language Models
deepDiagnosis
A torch package for learning diagnosis models from temporal patient data.
dmm
Deep Markov Models
embeddings
Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"
HealthKnowledgeGraph
Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data
omop-learn
Python package for machine learning for healthcare using a OMOP common data model
prancer
Platform enabling Rapid Annotation for Clinical Entity Recognition
structuredinference
Structured Inference Networks for Nonlinear State Space Models
TabLLM
Sontag Lab's Repositories
clinicalml/structuredinference
Structured Inference Networks for Nonlinear State Space Models
clinicalml/embeddings
Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"
clinicalml/dmm
Deep Markov Models
clinicalml/deepDiagnosis
A torch package for learning diagnosis models from temporal patient data.
clinicalml/HealthKnowledgeGraph
Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data
clinicalml/gumbel-max-scm
Code for "Counterfactual Off-Policy Evaluation with Gumbel-Max Structural Causal Models" (ICML 2019)
clinicalml/ML-tools
Miscellaneous tools for clinical ML
clinicalml/anchorExplorer
clinicalml/trajectory-inspection
Code for "Trajectory Inspection: A Method for Iterative Clinician-Driven Design of Reinforcement Learning Studies"
clinicalml/dgm
Deep Generative Model (Torch)
clinicalml/amr-uti-stm
Code for "A decision algorithm to promote outpatient antimicrobial stewardship for uncomplicated urinary tract infection"
clinicalml/dgc_predict
Applies and evaluates a variety of methods to complete a partially-observed data tensor, e.g. comprising gene expression profiles corresponding to various drugs, applied in various cellular contexts.
clinicalml/mimic-language-model
A conditional language model for MIMIC-III.
clinicalml/ckd_progression
clinicalml/overparam
clinicalml/amr-uti-kdd
Treatment Policy Learning in Multiobjective Settings with Fully Observed Outcomes (KDD 2020)
clinicalml/mimicnotes
Concept extraction from MIMIC3 notes
clinicalml/CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
clinicalml/mimic_annotations
clinicalml/surprising-sepsis
clinicalml/clinical-anchors
clinicalml/fully-observed-policy-learning
Code for "Treatment Policy Learning in Multiobjective Settings with Fully Observed Outcomes" (KDD 2020)
clinicalml/theanomodels
A lightweight wrapper around theano for rapid-prototyping of models
clinicalml/fw-inference
Barrier Frank-Wolfe for Marginal Inference
clinicalml/oncology_rationale_extraction
Functionality from "Automated NLP extraction of clinical rationale for treatment discontinuation in breast cancer"
clinicalml/overlap-code
Code for "Characterization of Overlap in Observational Studies" (AISTATS 2020)
clinicalml/eicu-code
Code shared by the research community for the eICU Collaborative Research Database
clinicalml/noise-estimation
Methods to estimate noise rates of classifiers
clinicalml/parkinsons-disease-progression-modeling
Code for Christina X Ji's MEng thesis: Modeling progression of Parkinson's disease https://dspace.mit.edu/handle/1721.1/124250
clinicalml/startbootstrap-clean-blog
A clean Bootstrap blog theme created by Start Bootstrap