Pinned Repositories
admixtools
bamfreq
get base counts from bam alignment files
bsh-ref
Sample genotypes from BAM alignments -- based on reference panel data
jaxGPs
Gaussian Process Regression with JAX
MVNclust
Clustering using multivariate Gaussian mixtures
nQuire
A statistical framework for ploidy estimation using NGS short-read data
seqfilter
Filter fasta/fastq(.gz) files by ID and/or sequence length
seqstats
Quick summary statistics on fasta/fastq(.gz) files
spatial_extinction_sim
ts-ipc
inter-process communication with tree sequences
clwgg's Repositories
clwgg/nQuire
A statistical framework for ploidy estimation using NGS short-read data
clwgg/seqfilter
Filter fasta/fastq(.gz) files by ID and/or sequence length
clwgg/seqstats
Quick summary statistics on fasta/fastq(.gz) files
clwgg/bamfreq
get base counts from bam alignment files
clwgg/spatial_extinction_sim
clwgg/jaxGPs
Gaussian Process Regression with JAX
clwgg/ts-ipc
inter-process communication with tree sequences
clwgg/admixtools
clwgg/bsh-ref
Sample genotypes from BAM alignments -- based on reference panel data
clwgg/MVNclust
Clustering using multivariate Gaussian mixtures
clwgg/anaconda-mode
Code navigation, documentation lookup and completion for Python.
clwgg/bsh-denovo
Sample genotypes from BAM alignments -- discover sites de novo
clwgg/fap
clwgg/feed2maildir
Convert an RSS/Atom feed to maildir
clwgg/GPflow
Gaussian processes in TensorFlow
clwgg/htslib
C library for high-throughput sequencing data formats
clwgg/sgkit
Statistical genetics toolkit
clwgg/shinyGMM
clwgg/spacemacs
A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!
clwgg/spatialdata
An open and universal framework for processing spatial omics data
clwgg/spatialdata-io
clwgg/spatialdata-plot
Static plotting for spatialdata
clwgg/tskit
Analyse, create and manipulate tree sequences.
clwgg/ugat
Exponential decay fitting to ancient DNA C-to-T substitution patterns