CMBI

Pinned Repositories

bdb
Create B-factor DataBank coordinate files with isotropic total B-factors
Language:Python2 9 282
Benchmarking_splice_prediction_tools
Analysis scripts used for the manuscript Benchmarking deep learning splice prediction tools using functional splice assays
Language:Python4 2 01
dssp
The DSSP building software
Language:C++39 5 1120
galiphy
ranking of genes using human phenotypes
Language:HTML2 2 11
hommod-kmad
pairiwise alignment for homology modelling
Language:C++1 5 31
hssp
Create DSSP and HSSP files
Language:C++86 11 11818
kmad
Knowledge based multiple sequence alignment for intrinsically disordered proteins
Language:C++8 10 364
kmad-web
Language:HTML1 9 371
metadome
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
Language:Python7 8 502
SUsPECT
Variant effect prediction based on custom long-read transcriptomes
Language:Nextflow7 7 02

CMBI's Repositories

cmbi/hssp
Create DSSP and HSSP files
Language:C++86 11 11818
cmbi/dssp
The DSSP building software
Language:C++39 5 1120
cmbi/kmad
Knowledge based multiple sequence alignment for intrinsically disordered proteins
Language:C++8 10 364
cmbi/metadome
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
Language:Python7 8 502
cmbi/SUsPECT
Variant effect prediction based on custom long-read transcriptomes
Language:Nextflow7 7 02
cmbi/galiphy
ranking of genes using human phenotypes
Language:HTML2 2 11
cmbi/compact-bio
comparative clustering tool
Language:Python1 2 00
cmbi/hommod
Homology Modeling Service
Language:Python1 8 473
cmbi/kmad-web
Language:HTML1 9 371
cmbi/xssp-api
xssp-rest is a REST wrapper around the mkhssp and mkdssp applications.
Language:Python1 9 974
cmbi/BrainDM1
Scripts and files to reproduce the analysis of "A comprehensive atlas of fetal splicing patterns in the brain of adult myotonic dystrophy type 1 patients".
Language:R0 5 00
cmbi/hpi_isoseq_paper
Analysis scripts to accompany the manuscript titled "Multi-omic profiling of pathogen-stimulated primary immune cells"
Language:Python0 6 00
cmbi/NA12878-saav-detection
Salz et al (2021). The personalized proteome: a critical examination of bias in protein variant detection methods. Journal of Proteome Research
Language:Jupyter Notebook0 7 00
cmbi/alphafold_finetune
Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
Language:Python
cmbi/bdb-web
BDB-web
Language:Python9 222
cmbi/databanks
Language:Perl8 12
cmbi/DM1_blood_RNAseq
Language:R3 0
cmbi/FAIRDataPoint
for search extension
Language:Java1 0
cmbi/FAIRDataPoint-client
FAIR Data Point Client application for browsing the metadata and administration.
Language:Vue1 01
cmbi/gdomain
gdomain tool
Language:Python3 0
cmbi/mrs
Maarten's Retrieval Service
Language:C9 563
cmbi/Neural-Retina-Atlas
Language:Python4 0
cmbi/pmhc-diffusion-model
Code to build diffusion models for pMHC structural data
Language:Python2 0
cmbi/reprof-api
RESTful service for running reprof
Language:Python8 111
cmbi/Retina-SpliceAI
Language:Jupyter Notebook3 0
cmbi/seqwise-prediction
a deep learning tool for sequence wise prediction of protein classes
Language:Python0 0
cmbi/serendip_api
restful service that runs serendip for you
Language:Python5 01
cmbi/synthetic_cells
Language:Python1 0
cmbi/whynot2
Language:Python8 412
cmbi/wsv_rest
A restful service, used as wrapper around whatif wsv commands
Language:Python4 0