Pinned Repositories
bdb
Create B-factor DataBank coordinate files with isotropic total B-factors
Benchmarking_splice_prediction_tools
Analysis scripts used for the manuscript Benchmarking deep learning splice prediction tools using functional splice assays
dssp
The DSSP building software
galiphy
ranking of genes using human phenotypes
hssp
Create DSSP and HSSP files
kmad
Knowledge based multiple sequence alignment for intrinsically disordered proteins
kmad-web
metadome
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
proseqjs
A javascript canvas library for visualizing protein sequence and structure properties
SUsPECT
Variant effect prediction based on custom long-read transcriptomes
CMBI's Repositories
cmbi/hssp
Create DSSP and HSSP files
cmbi/dssp
The DSSP building software
cmbi/kmad
Knowledge based multiple sequence alignment for intrinsically disordered proteins
cmbi/metadome
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
cmbi/SUsPECT
Variant effect prediction based on custom long-read transcriptomes
cmbi/galiphy
ranking of genes using human phenotypes
cmbi/compact-bio
comparative clustering tool
cmbi/hommod
Homology Modeling Service
cmbi/kmad-web
cmbi/xssp-api
xssp-rest is a REST wrapper around the mkhssp and mkdssp applications.
cmbi/BrainDM1
Scripts and files to reproduce the analysis of "A comprehensive atlas of fetal splicing patterns in the brain of adult myotonic dystrophy type 1 patients".
cmbi/hpi_isoseq_paper
Analysis scripts to accompany the manuscript titled "Multi-omic profiling of pathogen-stimulated primary immune cells"
cmbi/NA12878-saav-detection
Salz et al (2021). The personalized proteome: a critical examination of bias in protein variant detection methods. Journal of Proteome Research
cmbi/bdb-web
BDB-web
cmbi/databanks
cmbi/DM1_blood_RNAseq
cmbi/FAIRDataCube
cmbi/FAIRDataPoint
for search extension
cmbi/FAIRDataPoint-client
FAIR Data Point Client application for browsing the metadata and administration.
cmbi/mrs
Maarten's Retrieval Service
cmbi/Neural-Retina-Atlas
cmbi/pmhc-diffusion-model
Code to build diffusion models for pMHC structural data
cmbi/position-encoding
utility library for position encoding in torch
cmbi/reprof-api
RESTful service for running reprof
cmbi/seqwise-prediction
a deep learning tool for sequence wise prediction of protein classes
cmbi/serendip_api
restful service that runs serendip for you
cmbi/synthetic_cells
cmbi/vase
Visualization of Alignments Structures and Entropy
cmbi/whynot2
cmbi/wsv_rest
A restful service, used as wrapper around whatif wsv commands