Get HSSP Database

Question

Get HSSP Database

Opened this issue 4 years ago · 4 comments

Hello. How can I download the HSSP database and store it?
I check
rsync -avz rsync://rsync.cmbi.umcn.nl/hssp/ /local_hssp_path/
and
ftp://ftp.cmbi.umcn.nl/pub/molbio/data/hssp/
but it doesn't work, and I can't download it.

Answer 1 · 2020-11-10T10:58:02.000Z

rsync -avz rsync://rsync.cmbi.umcn.nl/hssp/ /local_hssp_path/ should work. It works in my case.

Doesn't it say "receiving incremental file list" ?

Answer 2 · 2020-11-10T18:14:27.000Z

Yes. It says, but it doesn't download any HSSP file.

Answer 3 · 2020-11-11T09:04:19.000Z

That means rsync is still busy listing all the files that are in the hssp databank folder. (120 000 files) Downloading individual hssp files is way faster. Try:

rsync -avz rsync://rsync.cmbi.umcn.nl/hssp/101m.hssp.bz2 .

Or replace 101m by the pdb accession code of the file you want.

Answer 4 · 2020-11-12T23:24:29.000Z

Thank's a lot. It works correctly.