cmdoret

cmdoret's Stars

• XiaoTaoWang/NeoLoopFinder

  A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes

  Language:Python5716

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.1k603

• krassowski/complex-upset

  A library for creating complex UpSet plots with ggplot2 geoms

  Language:Jupyter Notebook45428

• Edinburgh-Genome-Foundry/Geneblocks

  :diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences

  Language:Python383

• rapidfuzz/RapidFuzz

  Rapid fuzzy string matching in Python using various string metrics

  Language:C++2.6k117

• iterative/cml

  ♾️ CML - Continuous Machine Learning | CI/CD for ML

  Language:JavaScript4k341

• facebookresearch/detectron2

  Detectron2 is a platform for object detection, segmentation and other visual recognition tasks.

  Language:Python30.1k7.4k

• bioconvert/bioconvert

  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

  Language:Python36544

• fawaz-dabbaghieh/bubble_gun

  Language:Python342

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python937175

• pnpnpn/dna2vec

  dna2vec: Consistent vector representations of variable-length k-mers

  Language:Python18160

• matze/mtheme

  A modern LaTeX Beamer theme

  Language:TeX6.4k841

• fogleman/primitive

  Reproducing images with geometric primitives.

  Language:Go12.7k616

• pystardust/ytfzf

  A posix script to find and watch youtube videos from the terminal. (Without API)

  Language:Shell3.8k346

• hussius/deeplearning-biology

  A list of deep learning implementations in biology

  2k481

• calico/basenji

  Sequential regulatory activity predictions with deep convolutional neural networks.

  Language:Python395121

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k194

• thackl/gggenomes

  A grammar of graphics for comparative genomics

  Language:R58665

• jorvlan/raincloudplots

  {package} The easy way to create raincloud plots

  Language:R15817

• tolkit/fasta_windows

  A Rust implementation of sliding window stats over fastas.

  Language:Rust132

• Nagasaki45/bibo

  Command line reference manager with a single source of truth: the .bib file. Inspired by beets.

  Language:TeX324

• courtiol/Rguides

  Alternative cheat sheets for R

  538

• pjedge/longshot

  diploid SNV caller for error-prone reads

  Language:Rust18026

• grailbio/bio

  Bioinformatic infrastructure libraries

  Language:Go7516

• Gabriella439/bench

  Command-line benchmark tool

  Language:Haskell87121

• junegunn/fzf

  :cherry_blossom: A command-line fuzzy finder

  Language:Go64.2k2.4k

• open2c/bioframe

  Genomic interval operations on Pandas DataFrames

  Language:Python17228

• vanheeringen-lab/genomepy

  genes and genomes at your fingertips

  Language:Python37737

• shenwei356/bio

  A lightweight and high-performance bioinformatics package in Golang

  Language:Go929

• saketkc/pysradb

  Package for fetching metadata and downloading data from SRA/ENA/GEO

  Language:Python31050