cmkobel

cmkobel's Stars

• dylanaraps/pure-sh-bible

  📖 A collection of pure POSIX sh alternatives to external processes.

  Language:Shell6.5k9423282

• star-history/star-history

  The missing star history graph of GitHub repos - https://star-history.com

  Language:TypeScript6.4k26101260

• steineggerlab/foldseek

  Foldseek enables fast and sensitive comparisons of large structure sets.

  Language:C7801931999

• biobakery/MetaPhlAn

  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

  Language:Python2942020585

• ncbi/amr

  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

  Language:C++2642611637

• biobakery/biobakery

  bioBakery tools for meta'omic profiling

  Language:Shell257164773

• jotech/gapseq

  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

  Language:R1521019532

• SionBayliss/PIRATE

  A toolbox for pangenome analysis and threshold evaluation.

  Language:Perl9098529

• bacpop/ggCaller

  Bifrost graph gene caller.

  Language:C++863296

• xavierdidelot/BactDating

  Bayesian inference of ancestral dates on bacterial phylogenetic trees

  Language:R8266415

• jolespin/veba

  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

  Language:Python773449

• niemasd/TreeCluster

  Efficient phylogenetic clustering of viral sequences

  Language:Python733109

• bgruening/conda_r_skeleton_helper

  Cleaning up Conda r-packages

  Language:Python4772733

• Kalan-Lab/zol

  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

  Language:Python45254

• hoelzer-lab/ribap

  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs

  Language:HTML253434

• MicrobialDarkMatter/nanomotif

  Nanomotif - a tool for identifying methylated motifs in metagenomic samples

  Language:Python222301

• skyhop/FlightAnalysis

  This library extracts flight information from aircraft movements like departure airfield and time, arrival airfield and time, total flight time and more.

  Language:C#174183

• stjacqrm/centroid

  tool to determine optimal refrerence genome given a set of fasta files

  Language:Python14103

• Wanli-HE/Plaspline

  Language:Python13001

• Kalan-Lab/lsaBGC-Pan

  lsaBGC - suite for pan-BGC-omics analysis

  Language:Python12292

• yinlabniu/eCAMI

  Simultaneous Classification and Motif Identification(eCAMI)

  Language:Python10004

• Waschina/cobrar

  COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R

  Language:R6240

• lskatz/dists2trees

  Generic distances to trees pipeline

  Language:Perl422

• Waschina/Eutropia

  Agent-based metabolic modelling of microbial communities in time and continuous µ-meter-scale space

  Language:R3320

• yan1365/rumen_eukaryotes

  Language:Jupyter Notebook2101

• cmkobel/mspipeline1

  🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.

  Language:Python1250

• conda-forge/r-chnosz-feedstock

  A conda-smithy repository for r-chnosz.

  Language:Shell1701

• MIKKELLORENZ/BioPilot-Open-Research

  Open research from BioPilot

  110

• persondoingstuff/Songtwister

  Twist songs by removing or transforming beats

  Language:Python111

• shashank-KU/OmniCorr

  Calculate correlation between two omics data

  Language:R1100