Centre for mathematical modelling of infectious diseases

London School of Hygiene & Tropical Medicine

London

Pinned Repositories

cmmid.github.io
Language:HTML33 24 314
covid-age
Analysis code and data for COVID-19 age-specific clinical fraction
Language:R22 4 112
covid-uk
Scenario analyses for COVID-19 outbreak in the United Kingdom
Language:R64 15 1028
CovidItalyNow
Temporal variation in transmission in Italy during the COVID-19 outbreak
Language:HTML7 25 30
covidm_reports
LMIC reports using the covidm model framework
Language:R10 11 16
gettingstarted
Some useful resources for new starters
00
hhh4-workshop
Workshop on hhh4 and the endemic-epidemic framework
Language:HTML16 7 24
pcr-profile
Language:R10 6 012
ringbp
Language:R53 11 123
SA2UK
Language:R9 7 20

Centre for mathematical modelling of infectious diseases's Repositories

cmmid/ringbp
Language:R53 11 123
cmmid/cmmid.github.io
Language:HTML33 24 314
cmmid/hhh4-workshop
Workshop on hhh4 and the endemic-epidemic framework
Language:HTML16 7 24
cmmid/covidm_reports
LMIC reports using the covidm model framework
Language:R10 11 16
cmmid/pcr-profile
Language:R10 6 012
cmmid/SA2UK
Language:R9 7 20
cmmid/hero-study
Language:R4 2 0
cmmid/SoftwareChatter
Software engineering discussion group resources
Language:HTML4 7 02
cmmid/quar_test_contact_tracing
Language:R3 7 24
cmmid/vaxco
Language:R3 5 01
cmmid/effestimator
Language:R2 1 01
cmmid/epinow2_hpcarray
used for R estimation supporting covidm_reports repository analysis
Language:R2 7 0
cmmid/mtm
workspace for MTM networks revision
Language:R2 6 31
cmmid/MTM-2023
MTM material, 2023 (package) version
Language:R2 7 296
cmmid/paramix
a package for aggregating parameters and disaggregating outcomes from compartmental models
Language:R2 3 0
cmmid/uk_movement_communities_covid
Repository of code for the publication: "Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19." Gibbs et al. 2021.
Language:R2 2 11
cmmid/ab_boosting_published
Language:R1 1 0
cmmid/coronavirus_immunity
code for paper - fitting seasonal coronavirus and simulating covid
Language:R1 3 51
cmmid/covid_quar_test_import_risk
Language:R1 4 0
cmmid/covidbcell
Language:R1 1 0
cmmid/uk_fb_population_estimation
Repository for source code to estimate population changes in the UK with Facebook population data
Language:R1 2 0
cmmid/comix_mobility
Language:R0 2 00
cmmid/gettingstarted
Some useful resources for new starters
00
cmmid/.github
cmmid/covidTestVac
Language:TeX5 0
cmmid/pcr_entry_screening_eurosurv
Language:R4 0
cmmid/rsv_resceu_compare
Code for the RESCEU model comparison work
Language:C++2 0
cmmid/rsvie
Language:C++1 2
cmmid/rsvmabmat
Language:R
cmmid/travel_screening_strategies
Language:R3 02