uk_movement_communities_covid
Repository of code supporting the publication: "Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19." Gibbs et al. 2021.
Hamish Gibbs1, Emily Nightingale, Yang Liu, James Cheshire, Leon Danon, Liam Smeeth, Carl AB Pearson, Chris Grundy, LSHTM CMMID COVID-19 working group, Adam J Kucharski and Rosalind M Eggo.
Overview
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├── .gitignore
├── LICENSE
├── README.md
├── data # Directory of all publication data (untracked)
│ ├── raw # Directory of unaltered data
│ ├── geo # Directory of unaltered geospatial data
│ ├── age_data # Directory of unaltered age data
│ ├── census # Directory of unaltered census population data
│ ├── census_lookups # Directory of unaltered lookups between statistical areas
│ ├── ethnicity_data # Directory of unaltered ethnicity data
│ └── imd_data # Directory of unaltered imd data
│ └── processed # Directory of processed data
│ ├── census # Directory of processed census population data
│ ├── geo # Directory of processed geospatial data
│ ├── geo_lu # Directory of processed geospatial lookups data
│ ├── infomap # Directory of processed infomap communities
│ ├── mob # Directory of processed mobility data
│ └── pop # Directory of processed population data
└── src # Directory of all source code
├── data # Directory of data processing code
├── cases # Directory of cases analysis code
├── representative # Directory of representativity analysis code
├── network # Directory of network structure analysis code
├── communities # Directory of communities analysis code
└── local_interventions # Directory of local intervention communities analysis code