cmrn-rhi
SFU Health Sciences PhD interested in Ontologies, Bioinformatics, Data Science, and UX design.
@cidgohNorth Vancouver, BC
cmrn-rhi's Stars
NickeManarin/ScreenToGif
🎬 ScreenToGif allows you to record a selected area of your screen, edit and save it as a gif or video.
hadley/r4ds
R for data science: a book
brewsci/homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
FoodOntology/foodon
The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.
cidgoh/DataHarmonizer
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
OBOAcademy/obook
OBO Organized Knowledge: Training materials for becoming an OBO engineer
jamesaoverton/obo-tutorial
A tutorial on using Open Biological and Biomedical Ontologies (OBO)
bcgsc/orca
:whale: Genomics Research Container Architecture
OBOFoundry/COB
An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
pha4ge/SARS-CoV-2-Contextual-Data-Specification
Collection template and associated materials for SARS-CoV-2 metadata
UBC-R-Study-group/studyGroup
UBC R Study Group
FoodOntology/joint-food-ontology-wg
This is a repository for documents and issues related to the development of interoperable food related ontologies.
CIDO-ontology/cido
CIDO: Coronavirus Infectious Disease Ontology
information-artifact-ontology/ontology-metadata
OBO Metadata Ontology
GenEpiO/genepio
The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne infectious disease surveillance and outbreak investigations.
Global-Policy-Lab/gpl-covid
Repo for code and small datasets related to Global Policy Lab's COVID-19 policy analysis. Read and share the acompanying article here:
prog4biol/pfb2018
vaccineontology/VO
Vaccine Ontology
ApolloDev/apollo-sv
Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate repository.
pha4ge/contextual_data_QC_tags
Standardized attributes for labelling sequence datasets with known quality control issues
NuriaQueralt/covid19-epidemiology-ontology
Epidemiology and monitoring ontology for COVID-19
ianabc/WestGridRSS2020
cidgoh/geem
Genomic Epidemiology Entity Mart
cidgoh/ontotraining
A repository for ontology training materials
CIDO-ontology/COVID-19-ontology-harmonization
This is a space for harmonizing COVID-19 ontologies to build a suit of ontologies that are interoperable and sustainable for end users.
dfornika/LexMapr
LexMapr: A Lexicon and Rule-Based Tool for Translating Short Biomedical Specimen Descriptions into Semantic Web Ontology Terms
cidgoh/specification-training
Training materials about developing and applying data specifications
Public-Health-Bioinformatics/decision-tree
A question and answer web form system for exploring the research questions and datasets pertinent to an emerging infectious disease outbreak.
Public-Health-Bioinformatics/tutorial
Protege tutorial resources
zovoilis-lab/REDItools
REDItools are python scripts to investigate RNA editing at genomic scale.