CNR-IBBA

Bioinformatic Group @ CNR-IBBA

Milan

Pinned Repositories

BIOINFO-guidelines
Bioinformatic Guidelines @ IBBA-CNR
3 3 80
dockerfiles
A useful repository for Docker file
Language:Perl4 3 21
IMAGE-ansible
Ansible configuration for image server
Language:Jinja0 4 70
IMAGE-InjectTool
Load IMAGE data into BioSample
Language:Python3 4 490
nf-treemix
A nextflow pipeline which executes treemix on a population of interest
Language:Nextflow0 1 50
nf-treeseq
Nextflow pipeline to convert genotype data into Tree Sequences
Language:Nextflow0 1 30
pyUSIrest
Python USI submission REST API contain all methods to interact with EMBL-EBI Unified Submissions Interface
Language:Python1 2 40
r-smarter-api
R code to query SMARTER-backend
Language:R2 1 120
shiny-server
Shiny Server @CNR-IBBA
Language:JavaScript7 3 12
SMARTER-database
Smarter database repository
Language:Jupyter Notebook0 3 420

CNR-IBBA's Repositories

cnr-ibba/shiny-server
Shiny Server @CNR-IBBA
Language:JavaScript7 3 12
cnr-ibba/dockerfiles
A useful repository for Docker file
Language:Perl4 3 21
cnr-ibba/BIOINFO-guidelines
Bioinformatic Guidelines @ IBBA-CNR
3 3 80
cnr-ibba/IMAGE-InjectTool
Load IMAGE data into BioSample
Language:Python3 4 490
cnr-ibba/r-smarter-api
R code to query SMARTER-backend
Language:R2 1 120
cnr-ibba/pyUSIrest
Python USI submission REST API contain all methods to interact with EMBL-EBI Unified Submissions Interface
Language:Python1 2 40
cnr-ibba/IMAGE-ansible
Ansible configuration for image server
Language:Jinja0 4 70
cnr-ibba/IMAGE-DiversityBrowser
Manage code for IMAGE Diversity Browser
Language:Jupyter Notebook0 4 00
cnr-ibba/IMAGE-Portal
IMAGE Data Portal - Frontend code for IMAGE Data Portal and API
Language:TypeScript0 4 00
cnr-ibba/nf-neestimator
A nextflow pipeline for Current Effective Population Size (Ne) calculations with bootstrapping
Language:Nextflow0 1 20
cnr-ibba/nf-treemix
A nextflow pipeline which executes treemix on a population of interest
Language:Nextflow0 1 50
cnr-ibba/nf-treeseq
Nextflow pipeline to convert genotype data into Tree Sequences
Language:Nextflow0 1 30
cnr-ibba/SMARTER-backend
SMARTER Backend API
Language:Python0 3 280
cnr-ibba/SMARTER-database
Smarter database repository
Language:Jupyter Notebook0 3 420
cnr-ibba/SMARTER-frontend
SMARTER Database frontend
Language:TypeScript0 1 110
cnr-ibba/IMAGE-CommonDataPool
IMAGE Common Data Pool - PostgreSQL, metadata structure and data loading scripts
Language:Python4 5
cnr-ibba/IMAGE-genotype
EVA submission guideline and the import script
Language:Python
cnr-ibba/IMAGE-metadata
IMAGE metadata definitions
Language:Perl5 0
cnr-ibba/IMAGE-ValidationTool
IMAGE Validation Tool component of the IMAGE Inject Tool
Language:Python4 2
cnr-ibba/nf-chip-alignment
Align chip probes to a reference genome
Language:Python1 5
cnr-ibba/nf-modules
Custom Nextflow DSL2 modules
Language:Nextflow2 19
cnr-ibba/nf-resequencing-mem
Nextflow resequencing pipeline with bwa-mem and freebayes
Language:Nextflow2 40
cnr-ibba/SMARTER-repository
SMARTER Data Repository
Language:Python1 2
cnr-ibba/svevo-hapflk
Hapflk analysis of durum wheat
Language:R
cnr-ibba/svevo-permutations
Permutations for Fst calculations in durum wheat genetics
Language:R3 0

CNR-IBBA

Pinned Repositories

BIOINFO-guidelines

dockerfiles

IMAGE-ansible

IMAGE-InjectTool

nf-treemix

nf-treeseq

pyUSIrest

r-smarter-api

shiny-server

SMARTER-database

CNR-IBBA's Repositories

cnr-ibba/shiny-server

cnr-ibba/dockerfiles

cnr-ibba/BIOINFO-guidelines

cnr-ibba/IMAGE-InjectTool

cnr-ibba/r-smarter-api

cnr-ibba/pyUSIrest

cnr-ibba/IMAGE-ansible

cnr-ibba/IMAGE-DiversityBrowser

cnr-ibba/IMAGE-Portal

cnr-ibba/nf-neestimator

cnr-ibba/nf-treemix

cnr-ibba/nf-treeseq

cnr-ibba/SMARTER-backend

cnr-ibba/SMARTER-database

cnr-ibba/SMARTER-frontend

cnr-ibba/IMAGE-CommonDataPool

cnr-ibba/IMAGE-genotype

cnr-ibba/IMAGE-metadata

cnr-ibba/IMAGE-ValidationTool

cnr-ibba/nf-chip-alignment

cnr-ibba/nf-modules

cnr-ibba/nf-resequencing-mem

cnr-ibba/SMARTER-repository

cnr-ibba/svevo-hapflk

cnr-ibba/svevo-permutations