cnr-ibba/pyUSIrest

Python USI submission REST API contain all methods to interact with EMBL-EBI Unified Submissions Interface

Python USI submission REST API

Python USI submission REST API contain all methods to interact with EMBL-EBI Unified Submissions Interface

• Free software: GNU General Public License v3
• Documentation: https://pyusirest.readthedocs.io.

Features

• Deal with EBI AAP (Authentication, Authorisation and Profile) service, generating tokens and dealing with User and Groups
• Interact with EBI USI (Unified Submission Interface) in order to submit data to biosample as described by this guide. In details:
  • Getting USI API root
  • Selecting a Team
  • Creating a Submission
  • Adding items to Submission
  • Checking Biosample Validation
  • Finalising a Submission

API Endpoints

pyUSIrest is written to exploit the BioSamples test environment endpoints. You are incuraged to understand how BioSamples submission works before do a real submission in BioSamples production servers. You can find more information on how to do a real submission in BioSamples production servers in readthedocs documentation: https://pyusirest.readthedocs.io

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.