Computational Biology Laboratory

A laboratory of the Information Systems and Processing (ISP) group at the University of Aveiro

Aveiro, Portugal

Pinned Repositories

alcor
Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data
Language:C11 3 11
cryfa
A secure encryption tool for genomic data
Language:C++56 5 114
falcon
A tool to infer metagenomic sample composition
Language:C21 2 47
geco
A tool for compression and analysis of DNA sequences
Language:C8 3 05
geco2
An improved compression tool for DNA sequences
Language:C9 3 12
geco3
An efficient DNA sequence compressor using Neural Networks
Language:C14 3 28
gto
A genomics-proteomics toolkit
Language:C46 11 012
jarvis
Efficient lossless compression of genomic sequences
Language:C8 4 03
jarvis3
Efficient compression of biological data
Language:C4 1 50
smash
A tool to find and visualize rearrangements in DNA sequences
Language:C16 4 34

Computational Biology Laboratory's Repositories

cobilab/cryfa
A secure encryption tool for genomic data
Language:C++56 5 114
cobilab/gto
A genomics-proteomics toolkit
Language:C46 11 012
cobilab/falcon
A tool to infer metagenomic sample composition
Language:C21 2 47
cobilab/geco3
An efficient DNA sequence compressor using Neural Networks
Language:C14 3 28
cobilab/alcor
Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data
Language:C11 3 11
cobilab/geco2
An improved compression tool for DNA sequences
Language:C9 3 12
cobilab/jarvis
Efficient lossless compression of genomic sequences
Language:C8 4 03
cobilab/ac2
An efficient amino acid sequence compressor using Neural Networks
Language:C6 3 03
cobilab/chester
A memory efficient tool to map and visualize evolutionary regions
Language:C6 3 01
cobilab/eagle
An ultra-fast tool to find relative absent words in genomic data
Language:C5 2 06
cobilab/HumanGenome
How compressible is a human genome sequence?
Language:Shell5 2 01
cobilab/ac
A lossless compression tool for Amino Acid sequences
Language:C4 4 03
cobilab/altair
AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data
Language:C4 2 00
cobilab/jarvis3
Efficient compression of biological data
Language:C4 1 50
cobilab/RFSC
Reference-Free Sequence Classification Tool for DNA sequences in metagenomic samples
Language:Shell4 4 14
cobilab/jarvis2
Efficient DNA sequence compression
Language:C3 1 13
cobilab/CassavaGenome
How compressible is a Cassava genome sequence?
Language:Shell2 1 01
cobilab/cobilab.github.io
Cobilab website
Language:CSS2 2 01
cobilab/cpm-fcm
An encoder for biological sequences using Copy Models and Finite-context models
2 1 0
cobilab/magnet
An ultra-fast and high-sensitive tool to filter specific DNA content
Language:C2 2 02
cobilab/smashpp
Find and visualize rearrangements in DNA sequences
Language:C++2 1 01
cobilab/evo
Evolutionary patterns in SARS-CoV-2 genomes
Language:C1 2 0
cobilab/FASTA-ANALYSIS
Sorting of DNA sequences within a Multi-Fasta file
Language:Shell1 1 0
cobilab/fruit
Fast Relative Uniqueness fInder for proTein sequences
Language:Shell1 2 0
cobilab/MizaR
A sorting method for encoding metagenomic data
Language:Shell1 1 0
cobilab/nn-expert-mixer
Language:C++1 2 01
cobilab/OAWK
Language:Shell1 1 0
cobilab/OptimJV3
Optimize compression parameters of Jarvis3
Language:Shell1 1 0
cobilab/spark
This program schools, simulates, and searches for exact or approximate Turing Machines (TMs) with specific characteristics.
Language:C1 2 01
cobilab/SynTegra
A computational tool for simulation of viral synthetic integrations
Language:C1 2 0