cokelaer/bioservices

WARNING [bioservices:keggparser:119]: Found keyword SYMBOL, which has not special parsing for now. please report this issue with the KEGG

jjczajka opened this issue · 1 comments

jjczajka commented

Hello!
I received the following warnings which included the request to report them:

WARNING [bioservices:keggparser:119]:  Found keyword SYMBOL, which has not special
    parsing for now. please report this issue with the KEGG 
    identifier (b3774             CDS       T00007) into github.com/bioservices. Thanks T.C.
WARNING [bioservices:keggparser:119]:  Found keyword SYMBOL, which has not special
    parsing for now. please report this issue with the KEGG 
    identifier (b3774             CDS       T00007) into github.com/bioservices. Thanks T.C.
WARNING [bioservices:keggparser:119]:  Found keyword SYMBOL, which has not special
    parsing for now. please report this issue with the KEGG 
    identifier (b3774             CDS       T00007) into github.com/bioservices. Thanks T.C.
WARNING [bioservices:keggparser:119]:  Found keyword SYMBOL, which has not special
    parsing for now. please report this issue with the KEGG 
    identifier (b3774             CDS       T00007) into github.com/bioservices. Thanks T.C.
WARNING [bioservices:keggparser:119]:  Found keyword SYMBOL, which has not special
    parsing for now. please report this issue with the KEGG 
    identifier (b3774             CDS       T00007) into github.com/bioservices. Thanks T.C.
WARNING [bioservices:keggparser:119]:  Found keyword SYMBOL, which has not special
    parsing for now. please report this issue with the KEGG 
    identifier (b3774             CDS       T00007) into github.com/bioservices. Thanks T.C.
WARNING [bioservices:keggparser:119]:  Could not parse the entry CDS       T00007 correctly
WARNING [bioservices:keggparser:119]:  Could not parse the entry CDS       T00007 correctly
WARNING [bioservices:keggparser:119]:  Could not parse the entry CDS       T00007 correctly
WARNING [bioservices:keggparser:119]:  Could not parse the entry CDS       T00007 correctly
WARNING [bioservices:keggparser:119]:  Could not parse the entry CDS       T00007 correctly
WARNING [bioservices:keggparser:119]:  Could not parse the entry CDS       T00007 correctly
WARNING [bioservices:keggparser:119]:  not enough values to unpack (expected 2, got 1)
WARNING [bioservices:keggparser:119]:  not enough values to unpack (expected 2, got 1)
WARNING [bioservices:keggparser:119]:  not enough values to unpack (expected 2, got 1)
WARNING [bioservices:keggparser:119]:  not enough values to unpack (expected 2, got 1)
WARNING [bioservices:keggparser:119]:  not enough values to unpack (expected 2, got 1)
WARNING [bioservices:keggparser:119]:  not enough values to unpack (expected 2, got 1)

the link to the entry on KEGG is here

It seems that KEGG updated the gene name field to 'Symbol'.

cokelaer commented

This was fixed in 1.8.3
A new release 1.8.4 is coming soon that will fix other warnings