cokelaer/bioservices

Issues

• Error in parse_kgml_pathway -- examples/plot_kegg_relations.py

  #205 opened 6 months ago by timbitz
  2

• parse_kgml_pathway

  #258 opened 8 months ago by QubitBio
  1

• bioservics Panther

  #255 opened 8 months ago by liz-procogia
  1

• Can one save the output of show_pathway as png?

  #194 opened 3 years ago by willigott
  3

• BioMart filter input

  #257 opened a year ago by savoie-christopher
  0

• Unable to reach BioDBNet URL

  #256 opened a year ago by JoshLoecker
  1

• UniChem example from docs fails

  #253 opened a year ago by prismofeverything
  1

• Error in bioservices/uniprot.py

  #254 opened a year ago by chagas98
  1

• Is there plan to update Pubchem API?

  #252 opened a year ago by tuanpham96
  0

• request for convenience in KEGG.lookfor_organism

  #222 opened a year ago by necoli1822
  2

• Retrieving error from Psicquic request

  #248 opened a year ago by lionel-spinelli
  4

• error in PDBe module or just in the example?

  #247 opened a year ago by hrp1000
  1

• When importing UniProt from bioservices I get this TypeError: __init__() got an unexpected keyword argument 'text_color'

  #234 opened 2 years ago by AqibHasnain
  2

• [Bug in v1.11.0] Need to check for the presence of `failedIds` key in uniprot.mapping

  #245 opened 2 years ago by taoualiw
  3

• Limit of 25 proteins for UniProt mapping.

  #244 opened 2 years ago by ArnaudBelcour
  3

• Failing for UniProt examples

  #242 opened 2 years ago by johnnytam100
  1

• Debugging flag?

  #243 opened 2 years ago by wjshipman
  3

• KEGG 'MEMBER' keyword without special parsing & T/nt numbers

  #233 opened 2 years ago by nc1m
  3

• pip install gives FileNotFoundError for version 1.10.3

  #241 opened 2 years ago by gildossantos
  10

• ChEMBL Service cannot be reached

  #239 opened 2 years ago by ItamarChinn
  1

• pip install throws an OSError for version 1.10.1

  #235 opened 2 years ago by jeeva2812
  6

• Could not build wheels for gseapy

  #236 opened 2 years ago by ZhangSiliang1989
  1

• Include Uniprot secondary accessions in DataFrame columns

  #237 opened 2 years ago by joaquinabian
  1

• UniProt quick example is not working

  #224 opened 2 years ago by widdowquinn
  2

• uniprot ome columns have been dropped or changed

  #226 opened 2 years ago by cokelaer
  2

• Can't clone `bioservices` due to an `invalid path` error

  #231 opened 2 years ago by GianArauz
  1

• docs

  #210 opened 2 years ago by SilasK
  1

• KEGG warnings

  #225 opened 2 years ago by Kronossos
  0

• new uniprot service to be integrated

  #213 opened 2 years ago by cokelaer
  6

• uniprot mapping service does not work

  #223 opened 2 years ago by alexbioinf
  2

• Problem importing bioservices

  #197 opened 2 years ago by Benfeitas
  2

• KEGG 'EFFICACY' keyword without special parsing.

  #218 opened 2 years ago by nc1m
  2

• uniprot updated!! WARNING [bioservices.UniProt:596]: status is not ok with Bad Request

  #219 opened 2 years ago by 0x1orz
  1

• Found keyword SYMBOL, which has not special parsing for now.

  #217 opened 2 years ago by ginkyenglee
  1

• Unable to use caching in BioDBNet

  #216 opened 2 years ago by JoshLoecker
  1

• HGNC cannot be instantiated

  #215 opened 2 years ago by a-r-j
  1

• would be nice to have proteins service from EBI included as well

  #214 opened 2 years ago by cokelaer
  0

• Unichem api update

  #212 opened 2 years ago by JamesPino
  2

• Network error when initializing ChEBI and UniProt object

  #211 opened 2 years ago by mastevb
  1

• Parsing KEGG get() entries prints the entire dict

  #207 opened 2 years ago by smdabdoub
  1

• WARNING [bioservices:keggparser:119]

  #203 opened 2 years ago by raven44099
  2

• WARNING [bioservices:keggparser:119]: Found keyword STRUCTURE

  #204 opened 2 years ago by timbitz
  1

• WARNING [bioservices:keggparser:119]: Found keyword SYMBOL, which has not special parsing for now. please report this issue with the KEGG

  #202 opened 2 years ago by jjczajka
  1

• biomodels.get_all_models() hangs

  #200 opened 2 years ago by luciansmith
  1

• Doc errors

  #199 opened 2 years ago by luciansmith
  0

• `biomodels.get_all_models()` caught in endless while loop

  #208 opened 2 years ago by slobentanzer
  1

• New error when using db2db:

  #206 opened 2 years ago by babessell1
  1

• Access Open Targets with Bioservices

  #198 opened 3 years ago by areyesromero
  1

• Non-deterministic behavior for UniProt queries

  #196 opened 3 years ago by odietric
  1

• Found keyword SYMBOL, which has not special parsing for now

  #195 opened 3 years ago by smdabdoub
  1