wikipathways
There are 24 repositories under wikipathways topic.
cokelaer/bioservices
Access to Biological Web Services from Python.
wikipathways/pywikipathways
Python Client Package for WikiPathways
wikipathways/wikipathways.org
The main web site for the WikiPathways project.
wikipathways/GPML2RDF
GPML2RDF converter
bio2bel/wikipathways
Integration of pathway-related information from WikiPathways in BEL
egonw/wikipathways-chromosomes
Mapping WikiPathways to chromosomes
eonurk/cinaR-genesets
Ready-to-use curated genesets for cinaR
wikipathways/wikipathways-database
WikiPathways Database
bioclipse/bioclipse.wikipathways
Bioclipse plugins for WikiPathways and PathVisio
dhimmel/pathways
A compilation of pathway gene sets
francescopatane96/RNA-seq_Pipeline
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
wikipathways/nanopublications
Project to convert content of WPRDF into nanopublications.
wikipathways/reactome2gpml-converter
Converts Reactome pathways to GPML format
wikipathways/SARS-CoV-2-WikiPathways
Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.
wikipathways/SPARQLQueries
Queries for the WikiPathways SPARQL endpoint.
wikipathways/summit2018
WikiPathways Summit Planning
BiGCAT-UM/PRA3006-SPARQL
This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.
egonw/metawinterschool-bigcat
#metawinterschool contribution by BiGCaT
wikipathways/old-rwikipathways
R client package for the WikiPathways API.
wikipathways/WikiPathways-SPARQL-book
WikiPathways SPARQL Book
egonw/knime-wikipathways
KNIME nodes for WikiPathways.
larsgw/gpml-rhea
Collect chemical reactions from a GPML file and look for matching Rhea equations.
wikipathways/EuropePMCLinks
Repository for code to create the Europe PMC external links
wikipathways/wp-rdf-api
OpenAPI to extract information from WikiPathways.