wikipathways/GPML2RDF

Issues

• pathway datanodes are not typed wp:Pathway

  #102 opened 4 months ago by egonw
  1

• restore community tags

  #118 opened 4 months ago by egonw
  1

• VoID header on Jenkins has outdated link

  #103 opened 6 months ago by egonw
  1

• add Bioregistry-style compact identifiers

  #117 opened a year ago by egonw
  2

• Check infobox statement in GPML-RDF

  #113 opened 2 years ago by DeniseSl22
  2

• Add NCBI taxonomy ID

  #116 opened 2 years ago by DeniseSl22
  2

• GPML to WP RDF, and back

  #114 opened 2 years ago by DeniseSl22
  1

• gpml:version ?

  #115 opened 2 years ago by DeniseSl22
  0

• RDF has confusing datanodes for WP4657

  #110 opened 3 years ago by marvinm2
  7

• set Virtuoso default graph

  #109 opened 3 years ago by egonw
  1

• Use Wikidata subsets for Chemistry + Scholia data

  #107 opened 4 years ago by DeniseSl22
  1

• [SPARQL] Rhea's RDF

  #95 opened 4 years ago by egonw
  4

• [SPARQL] BeeGee interoperability

  #106 opened 4 years ago by DeniseSl22
  0

• [SPARQL] UniProt

  #81 opened 4 years ago by egonw
  0

• Change identifiers.org URLs to have https instead of http

  #98 opened 4 years ago by marvinm2
  4

• Publications cannot be listed for pathways

  #105 opened 4 years ago by egonw
  2

• PubMed identifier linked differently to Complexes

  #104 opened 4 years ago by egonw
  1

• WP rdf files with incorrect DOI IRIs

  #101 opened 4 years ago by marvinm2
  3

• Missing annotations for reactome pathways in RDF

  #76 opened 4 years ago by marvinm2
  1

• Register the endpoint with NanoCommons

  #99 opened 4 years ago by egonw
  2

• linkset metadata: titles in VoID wrong

  #100 opened 4 years ago by egonw
  1

• Change from rdf:type wp:Pathway to rdfs:subClassOf wp:Pathway

  #97 opened 4 years ago by andrawaag
  0

• support for .well-known/sparql-examples/

  #96 opened 4 years ago by egonw
  0

• Relevant ChEBI RDF in WP Endpoint

  #91 opened 4 years ago by DeniseSl22
  4

• the linkset info in the VoID is not picked up by YummyData

  #84 opened 4 years ago by egonw
  1

• WP2719

  #92 opened 4 years ago by DeniseSl22
  1

• identify the shapes for which to develop ShEX

  #67 opened 5 years ago by egonw
  7

• Update SPARQL endpoint documentation

  #90 opened 4 years ago by marvinm2
  0

• Test for spaces

  #85 opened 4 years ago by DeniseSl22
  9

• Update https://vocabularies.wikipathways.org/

  #89 opened 4 years ago by DeniseSl22
  0

• add 'needs work' and 'hypothetical' tags for the RDF for all pathways

  #88 opened 4 years ago by egonw
  1

• Wikipathways-api-client maven build issue

  #87 opened 4 years ago by DeniseSl22
  1

• Wikipathways-api-client git clone issues

  #86 opened 4 years ago by DeniseSl22
  2

• fix returning VoID for this YummyData test

  #77 opened 4 years ago by egonw
  1

• .well-known/void not restored

  #78 opened 4 years ago by egonw
  1

• Support of Complex identifiers

  #75 opened 5 years ago by egonw
  4

• resolvable WikiPathways RDF IRIs

  #83 opened 4 years ago by egonw
  0

• [SPARQL] Wikidata

  #80 opened 4 years ago by egonw
  1

• [SPARQL] EMBL-EBI's RDF - ChEMBL

  #82 opened 4 years ago by egonw
  0

• [SPARQL] NextProt

  #79 opened 4 years ago by egonw
  0

• Service Description for sparql.wikipathways.org

  #66 opened 5 years ago by egonw
  3

• "Neutralized" InChIKey in the WPRDF

  #68 opened 5 years ago by egonw
  6

• Recent change to description text breaks RDF extraction

  #73 opened 5 years ago by AlexanderPico
  1

• check if the pathway description is in the RDF

  #70 opened 5 years ago by egonw
  4

• include ontology information

  #72 opened 5 years ago by AlexanderPico
  2

• check for pathway ontology tags in the RDF

  #71 opened 5 years ago by egonw
  1

• MIM type for PTMs?

  #69 opened 5 years ago by egonw
  1

• update VoID header file to include link sets

  #65 opened 5 years ago by egonw
  1

• Update the VoID header file

  #63 opened 5 years ago by egonw
  0

• in the RDF the things Protein should also be typed GeneProduct

  #64 opened 6 years ago by egonw
  0