cole-trapnell-lab

Pinned Repositories

cicero-release
Language:R56 10 9715
cole-trapnell-lab.github.io
Language:HTML13 4 312
cufflinks
Language:C++311 36 117116
garnett
Automated cell type classification
Language:R105 10 6425
leidenbase
Language:C13 18 4113
monocle-release
Language:R279 39 503116
monocle2-rge-paper
Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
Language:Jupyter Notebook27 26 816
monocle3
Language:R333 21 642100
sci-plex
repository containing analysis scripts and auxiliary files
Language:R29 7 42
Scribe
Regulatory networks with Direct Information
Language:C++16 30 176

cole-trapnell-lab's Repositories

cole-trapnell-lab/monocle3
Language:R333 21 642100
cole-trapnell-lab/cufflinks
Language:C++311 36 117116
cole-trapnell-lab/monocle-release
Language:R279 39 503116
cole-trapnell-lab/garnett
Automated cell type classification
Language:R105 10 6425
cole-trapnell-lab/cicero-release
Language:R56 10 9715
cole-trapnell-lab/sci-plex
repository containing analysis scripts and auxiliary files
Language:R29 7 42
cole-trapnell-lab/monocle2-rge-paper
Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
Language:Jupyter Notebook27 26 816
cole-trapnell-lab/Scribe
Regulatory networks with Direct Information
Language:C++16 30 176
cole-trapnell-lab/cole-trapnell-lab.github.io
Language:HTML13 4 312
cole-trapnell-lab/leidenbase
Language:C13 18 4113
cole-trapnell-lab/cicero
Language:R11 4 189
cole-trapnell-lab/pseudospace
Language:R11 24 14
cole-trapnell-lab/worm-rna
The C. elegans transcriptome at single cell resolution
Language:Jupyter Notebook11 29 147
cole-trapnell-lab/yeast_umap
Using UMAP on gene expression data from single-gene deletion strains of yeast to identify gene interactions
Language:R8 7 13
cole-trapnell-lab/hooke
A package for comparing cell type abundances between conditions
Language:R5 4 221
cole-trapnell-lab/scRNASeqSim
A simulator for measuring developmental trajectories with single-cell RNA-seq
Language:R5 25 0
cole-trapnell-lab/DDRTree
An R implementation of the DDRTree algorithm for learning principal graphs
Language:C++4 28 24
cole-trapnell-lab/monocle
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/monocle.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=monocle.
Language:R2 3 0
cole-trapnell-lab/sci-Plex-GxE
Repository of analysis code for sci-Plex-GxE analysis
Language:R2 3 01
cole-trapnell-lab/sci-Space
Contains all the code used in the analysis of the sci-Space paper
Language:R2 4 02
cole-trapnell-lab/rccm
A modified cross-convergence mapping library
Language:R1 25 0
cole-trapnell-lab/sdg-zfish
Language:R1 4 01
cole-trapnell-lab/ATAC-Pipeline-Dev
Language:Python0 31 110
cole-trapnell-lab/hotfish
Language:HTML0 3 00
cole-trapnell-lab/homebrew-r-srf
Custom Homebrew R formula with tcl-tk support and additional options
Language:Ruby
cole-trapnell-lab/L1-graph
Language:R25 2
cole-trapnell-lab/PLNmodels
A collection of Poisson lognormal models for multivariate count data analysis
Language:R1 0
cole-trapnell-lab/RANNinf
Language:C++25 0
cole-trapnell-lab/sdg-mutant-paper-code
Github repository containing our analysis code
2 0
cole-trapnell-lab/tuxsim
Language:C++6 01