Issues
- 0
Cross-species comparative transcriptome analysis
#67 opened by Geryxu08 - 4
Regeneration Classifier
#66 opened by neurohugo - 1
Error in Creating CDS object for Garnett with Monocle 3: (Error: is(object = cds, class2 = "CellDataSet") is not TRUE)
#65 opened by marwaabdelazim - 3
Unable to download package
#63 opened by xu15825503775 - 0
Predicting Cell Type in VISIUM samples
#64 opened by justinesjw - 2
Run time to train new classifier
#61 opened by lwtan90 - 4
- 3
<simpleError: 'coef.cv.glmnet' is not an exported object from 'namespace:glmnet'>
#49 opened by evenDDDDD - 1
Marker list complexity for Garnett classifier
#60 opened by hbandukw - 2
Getting started with Garnett
#59 opened by mommymisato - 2
Force assignment to all cells?
#57 opened by igrabski - 2
all cells are classified as UNKNOWN
#58 opened by zh-zhang1984 - 2
Problem with sci-ATAC-seq analysis
#56 opened by nbxszby416 - 6
"Error: is(object = cds, class2 = "CellDataSet") is not TRUE" & Prediction of large amount of "Unknown"
#54 opened by nbxszby416 - 2
Changing cluster_extend_max_frac_unknown and cluster_extend=TRUE not results in less unknown
#55 opened by keithgmitchell - 2
Classifier Questions
#52 opened by AlexCocker - 2
- 1
- 1
Test Garnett with custom marker file
#51 opened by zznx - 2
- 2
- 5
Unable to access pData/fData
#20 opened by ccruizm - 1
train_cell_classifier getting stuck with no error
#47 opened by dmiyagi - 4
- 2
Cell Type Similarity
#44 opened by justinesjw - 2
Trouble creating my own classifier
#43 opened by smk5g5 - 2
simpleError: 'coef.cv.glmnet' is not an exported object from 'namespace:glmnet'
#42 opened by vswarup - 2
- 5
Cluster extend possible issue
#41 opened by lwhitmore - 5
<simpleError: 'coef.cv.glmnet' is not an exported object from 'namespace:glmnet'>
#32 opened by yejg2017 - 2
Creating a classifier using TPM values
#19 opened by ccruizm - 4
garnett_check_markers not working for Fly
#38 opened by dweemx - 1
Garnett Installtion Error
#37 opened by pbpayal - 3
cross species cell type transfer
#33 opened by justinesjw - 2
installation using github file fails with error due to R version in which VGAM was built...
#35 opened by SathiyaNManivannan - 0
build classifier on pre-labelled data
#25 opened by hpliner - 1
Garnett cluster graphs
#36 opened by lwhitmore - 2
Not enough training samples for any cell types at the root of cell type hierarchy
#34 opened by saisomesh2594 - 2
Classifier training issue
#24 opened by jentiger82 - 5
Not enough training samples for any cell types at root of cell type hierarchy!
#17 opened by DanSchnell - 4
bug in get_feature_genes() function
#22 opened by a-solovyev12 - 5
Potential bug in implementation of tfidf
#31 opened by VPetukhov - 2
- 4
- 0
Document return_initial_assign
#28 opened by hpliner - 1
- 1
- 1
classifier for Linnarson brain cell type
#21 opened by hhhcce - 12
Missing values in classifier
#14 opened by alextamburino - 1
low cell count
#16 opened by justinesjw