collaborativebioinformatics

Pinned Repositories

Disease_subsetting
Colorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis
Language:Jupyter Notebook9 5 02
GeneVar
Language:Jupyter Notebook123
GeneVar2
Language:R86
kvar
Language:Python62
nibSV
Language:Nim9 9 54
omics_clinical_reporting
Clinical_Report_Design_for_omics_integration
Language:HTML72
PhytoKmerCNV
Language:Shell6 5 00
Sniphles
Sniphles is a read-based phasing approach for phased variant calling of structural variants.
Language:Python12 11 02
SpikeVarTykeVar
Language:Python7 9 05
STRdust
Language:Python13 8 353

collaborativebioinformatics's Repositories

collaborativebioinformatics/SpikeVarTykeVar
Language:Python7 9 05
collaborativebioinformatics/PhytoKmerCNV
Language:Shell6 5 00
collaborativebioinformatics/Disease_Subtyping_2022
Language:Jupyter Notebook41
collaborativebioinformatics/SVHack_Mendelian
Language:Python42
collaborativebioinformatics/graphbasedtuning
Language:Jupyter Notebook2 4 0
collaborativebioinformatics/isocomp
Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq
Language:HTML2 6 59
collaborativebioinformatics/kgbasedvalidation
Language:Jupyter Notebook2
collaborativebioinformatics/SVeedy
Language:R24
collaborativebioinformatics/SVHack_assemblyvmapping
22
collaborativebioinformatics/SVHack_metagenomics
Everything is bigger in Texas: Pan-Structural Variation hackathon in the Cloud!
Language:Jupyter Notebook2 3 0
collaborativebioinformatics/SVHack_Pangenomics
2
collaborativebioinformatics/vcfs2kgs
Language:Jupyter Notebook21
collaborativebioinformatics/virussusceptibility
Language:Jupyter Notebook2 3 01
collaborativebioinformatics/CI4CCREFS
Data Management for Transformer Models -- References
1
collaborativebioinformatics/deeplearningmetagenomics
Understanding relationships between complex combinations of OTUs and chronic disease
Language:Python11
collaborativebioinformatics/Disease_subtyping_knowledge_graph
1
collaborativebioinformatics/NIST-GREX
Language:Jupyter Notebook1 6 00
collaborativebioinformatics/starfishDiscovery
Language:R13
collaborativebioinformatics/SVHack_HG002Mosaic
1
collaborativebioinformatics/tandemrepeats
Tandem Repeats Team -- 2024 SVCC Hackathon
Language:Jupyter Notebook1
collaborativebioinformatics/VariantSurvival
VariantSurvival a Shiny app/ R package to identify genotype-treatment response
Language:R12
collaborativebioinformatics/AMRdiscover
Language:Jupyter Notebook1
collaborativebioinformatics/DMDL_manuscript
Language:TeX
collaborativebioinformatics/Haploblock_Clusters
Language:Jupyter Notebook2
collaborativebioinformatics/LLM_SVs
Language:Python
collaborativebioinformatics/Mimic
Generates simulated ONT metegenomic samples based off existing microbiome sample abundances
Language:Python
collaborativebioinformatics/MoVana
Language:WDL
collaborativebioinformatics/PIBP
collaborativebioinformatics/SVHack_transcriptome
1
collaborativebioinformatics/VarClust
A Python package for clustering of single nucleotide variants from high-through seqencing data.
Language:Python