collaborativebioinformatics

Pinned Repositories

Disease_subsetting
Colorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis
Language:Jupyter Notebook9 5 02
GeneVar
Language:Jupyter Notebook12 7 03
GeneVar2
Language:R8 6 07
kvar
Language:Python6 4 02
nibSV
Language:Nim9 9 54
omics_clinical_reporting
Clinical_Report_Design_for_omics_integration
Language:HTML72
PhytoKmerCNV
Language:Shell6 5 00
Sniphles
Sniphles is a read-based phasing approach for phased variant calling of structural variants.
Language:Python12 11 02
SpikeVarTykeVar
Language:Python8 9 05
STRdust
Language:Python13 8 353

collaborativebioinformatics's Repositories

collaborativebioinformatics/STRdust
Language:Python13 8 353
collaborativebioinformatics/GeneVar
Language:Jupyter Notebook12 7 03
collaborativebioinformatics/Disease_subsetting
Colorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis
Language:Jupyter Notebook9 5 02
collaborativebioinformatics/nibSV
Language:Nim9 9 54
collaborativebioinformatics/GeneVar2
Language:R8 6 07
collaborativebioinformatics/omics_clinical_reporting
Clinical_Report_Design_for_omics_integration
Language:HTML72
collaborativebioinformatics/clinical_SVs
Clinically reportable structural variant calls
Language:R6 6 15
collaborativebioinformatics/kvar
Language:Python6 4 02
collaborativebioinformatics/INSeption
Language:Shell4 8 02
collaborativebioinformatics/Viewing_expressed_variants
Language:HTML43
collaborativebioinformatics/Biobank_notebooks
Notebooks for working with Biobank level data
3
collaborativebioinformatics/coronasv
Language:Python3 7 01
collaborativebioinformatics/omics_to_omop
This project will describe how to pass a clinical report format to omop and import data from omop to that report
Language:R3 3 01
collaborativebioinformatics/RNAseq_Dashboard
A dashboard for comparison of RNAseq approaches
Language:JavaScript3 4 11
collaborativebioinformatics/RPG_Pikachu
Language:R3 8 04
collaborativebioinformatics/cov2db
cov2db repo provides necessary scripts for building a database of low frequency variants
Language:Python25
collaborativebioinformatics/CRC-Dashboard
Language:CSS2 4 02
collaborativebioinformatics/Genevar22
Language:R24
collaborativebioinformatics/kTom
Language:HTML2 8 00
collaborativebioinformatics/expression_and_SNPs_to_clinic
Smooth transition of called variants from RNAseq and expression to the clinic
Language:R1 7 13
collaborativebioinformatics/imavirus
13
collaborativebioinformatics/The_X_team
Assembly based validation tool.
Language:Python1 7 00
collaborativebioinformatics/Genevar3
2 0
collaborativebioinformatics/Genevar_UKBRAP
collaborativebioinformatics/metagenome22
2
collaborativebioinformatics/open-cravat
A modular annotation tool for genomic variants
Language:JavaScript
collaborativebioinformatics/PDRI
An initial (draft) repo for discovery and documents of the Pan Disease drug Repurposing Initiative
2 0
collaborativebioinformatics/pggb
the pangenome graph builder -- cancer edition
Language:Shell1 0
collaborativebioinformatics/pharma_recommendation
2 0
collaborativebioinformatics/specific_biobank_use_cases
3 0