compbio-UofT/medsavant

Issues

• MedSavant Server permissions error on CentOS, Possibly redhat

  #348 opened 8 years ago by jvlasblom
  0

• Move init script to a systemd service for the RPM and .deb distributions

  #353 opened 9 years ago by meatcar
  0

• Switch to GRCh nomenclature

  #351 opened 10 years ago by mfiume
  1

• Add GRCh38

  #352 opened 10 years ago by mfiume
  1

• Add "include ref calls" option to the project wizard.

  #349 opened 10 years ago by meatcar
  0

• Database cannot be run on a separate machine from server

  #340 opened 10 years ago by meatcar
  1

• Upload new VCFs while the DB is locked

  #306 opened 11 years ago by ronammar
  1

• Patient fields should not be editable by non-admins

  #337 opened 10 years ago by mfiume
  2

• Guest users should be allowed to add comments, instead they receive an ugly message

  #347 opened 10 years ago by mfiume
  0

• VCF Upload progress bar doesn't show progress of single file.

  #344 opened 10 years ago by meatcar
  1

• App "update" button removes apps

  #346 opened 10 years ago by ronammar
  0

• Selecting Charts in Variant Navigator doesn't show a chart

  #345 opened 10 years ago by meatcar
  0

• Enable the use of a proxy to download resources

  #343 opened 10 years ago by meatcar
  2

• can't select reference when uploading VCF

  #342 opened 10 years ago by jvlasblom
  0

• Jannovar error thrown when annotating VCFs

  #341 opened 10 years ago by meatcar
  0

• jannovar should be updated

  #335 opened 10 years ago by jvlasblom
  2

• Unlocking the Project does not work

  #332 opened 10 years ago by mfiume
  1

• Improve field names for default annotations

  #329 opened 10 years ago by mfiume
  0

• Login using wrong password sometimes

  #324 opened 10 years ago by mfiume
  2

• Signing in page doesn't show if a previous sign in was cancelled

  #325 opened 10 years ago by mfiume
  2

• MedSavant login passwords change without being changed

  #323 opened 10 years ago by ronammar
  0

• Server Management dialog reports invalid hostname for valid hostnames

  #322 opened 10 years ago by jvlasblom
  0

• Login screen is buggy

  #318 opened 10 years ago by ronammar
  5

• Move all apps to Maven

  #302 opened 11 years ago by jvlasblom
  0

• In Mendel, Type is NULL in variant inspector

  #333 opened 10 years ago by mfiume
  0

• Deleting database in the Server Management page removes server from list.

  #339 opened 10 years ago by meatcar
  0

• Canceling image selection dialog throws error

  #336 opened 10 years ago by meatcar
  0

• Update phenotype to gene mapping, and recode to accept new format

  #338 opened 10 years ago by mfiume
  0

• Require usernames to be email addresses

  #315 opened 10 years ago by mfiume
  0

• When a new user is created, the server can phone home the user's email address using the AnalyticsAgent

  #316 opened 10 years ago by mfiume
  0

• Patient Directory > Variant Navigator communication doesn't add PillView

  #326 opened 10 years ago by mfiume
  0

• Test App switching on Linux and Windows

  #327 opened 10 years ago by mfiume
  0

• Test installers on all platforms

  #328 opened 10 years ago by mfiume
  1

• App switching does not work on Linux or Windows

  #330 opened 10 years ago by mfiume
  0

• Nullpointer exception in variant navigator on windows

  #311 opened 10 years ago by jvlasblom
  1

• ArrayIndexOutOfBounds if no cohorts defined

  #313 opened 10 years ago by jvlasblom
  3

• App icons take a long time to show after logging in.

  #314 opened 10 years ago by jvlasblom
  2

• Nullpointer exception when launching MedSavant on Windows 7

  #310 opened 10 years ago by jvlasblom
  0

• Checkbox background issues on Windows

  #312 opened 10 years ago by jvlasblom
  1

• COSMIC and SIFT comment fields should not be filterable

  #317 opened 10 years ago by mfiume
  1

• I get this error when trying to create a new DB

  #319 opened 10 years ago by ronammar
  2

• Regular users cannot upload variants via VCF Upload app

  #334 opened 10 years ago by jvlasblom
  1

• Basic variant information is cutoff if there is no gene

  #331 opened 10 years ago by jvlasblom
  1

• MedSavant hangs when it can't access genomesavant.com

  #321 opened 10 years ago by ronammar
  7

• Workaround needed for doing chmod in the server on Windows

  #320 opened 10 years ago by mfiume
  1

• jannovar annotations may exceed storage limit

  #304 opened 11 years ago by ronammar
  0

• jannovar serialized file need to be updated

  #305 opened 11 years ago by ronammar
  0

• project creation wizard does not accept enter as synonymous with continue

  #303 opened 11 years ago by jvlasblom
  0

• Compress VCFs on client side before uploading

  #308 opened 11 years ago by ronammar
  0

• MySQL connection can timeout.

  #307 opened 11 years ago by jvlasblom
  2