A collection of Julia scripts for bioinformatics in use by CBC. We have:
concatenate.jl: Concatenates multiple sequence alignments (as FASTAs) into a supermatrix. Outputs a FASTA file. We have a Jupyter notebook showing that it is about 6x faster than the equivalent BioPython function.fastq_screen_parse.jl: Go through the results of FASTQscreen and output either the intersection or the union of the results.extractReads.jl: Extract reads from a region in a BAM file.clipanalysis.jl: Analysis of soft and hard clipped reads in a BAM file.