Computational Biology Core

Brown University - Center for Computation and Visualization

Providence, RI

Pinned Repositories

bioconductor-workshop-1
7 3 011
bioconductor-workshop-2
3 3 09
bioflows
Bioflows is an easy to use package for running bioinformatics workflows.
Language:Python4 3 484
cbc-documentation-templates
Repository for documentation templates.
Language:CSS64
jupyterfleet
Cohesive utility to deploy and configure a group of AWS instances running Jupyter for teaching
Language:Python1 2 00
metagenomics-power-analyses-tutorial
Tutorial for doing power analyses for metagenomics.
Language:TeX4 4 16
qckit
Website for qckit, R packages for quality control of genomic sequencing data
Language:CSS1 2 00
refchef
YAML-based genomics reference management.
Language:Python4 1 342
RSeqAn
SeqAn headers for R
Language:C++32
VariantVisualization.jl
Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
Language:Julia84 2 6913

Computational Biology Core's Repositories

compbiocore/VariantVisualization.jl
Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
Language:Julia84 2 6913
compbiocore/refchef
YAML-based genomics reference management.
Language:Python4 1 342
compbiocore/compbiocore.github.io
Language:CSS1 2 0
compbiocore/DEseq_workshop_2_2021
Language:Jupyter Notebook1 2 0
compbiocore/poweranalyses
A collection of power analyses done for different sequencing experiments
Language:HTML1 2 0
compbiocore/qcviz-nuxt
QC Visualization App - Built with Nuxt.js
Language:Vue1
compbiocore/qcdb
QC Database
Language:Python0 4 281
compbiocore/refchef-ember
Revamped Refchef View Application. Built with Ember and GitHub API. (for Hugo version, check refchef-view repo)
Language:JavaScript0 3 00
compbiocore/analysis_template
Template for analysis repositories
compbiocore/bootcamp_scrna
Language:Dockerfile
compbiocore/cbc-references-refchef
Computational Biology Core List of References for RefChef
Language:Python
compbiocore/ccv_bootcamp_bioinfo
Language:Jupyter Notebook3 0
compbiocore/ccv_bootcamp_R
Language:Jupyter Notebook1
compbiocore/ccv_bootcamp_Reproducibility_R
Language:Jupyter Notebook
compbiocore/ccv_bootcamp_RNAseq_2023
Language:Jupyter Notebook4 0
compbiocore/covid19_analysis
Language:R
compbiocore/DSCOV_actions
This repository is for the DSCoV presentation on GitHub Actions
compbiocore/dscov_singlecell_2024
Language:HTML3 0
compbiocore/Fedulov_porcine_rrbs
Language:Shell2 0
compbiocore/iwong_poweranalysis
Language:HTML
compbiocore/NMR-WebApp
Language:Python3 6
compbiocore/NMR-WebApp-inputs
Language:Shell
compbiocore/pyscenic_jiatao
Language:Jupyter Notebook3 0
compbiocore/refchef-view
RefChef list table web app.
Language:CSS
compbiocore/scrna_r_workshop
Language:R
compbiocore/shallowvariant
ShallowVariant is an attempt to build a child model for the variant caller DeepVariant (for CSCI1470)
Language:Python
compbiocore/slee_poweranalysis
Language:HTML5 0
compbiocore/workflow_prototypes_on_OSCAR
Language:Nextflow4 0
compbiocore/workflows_on_OSCAR
Language:Python3 4
compbiocore/workflows_workshop
Language:Jupyter Notebook