Pinned Repositories
bioconductor-workshop-1
bioconductor-workshop-2
bioflows
Bioflows is an easy to use package for running bioinformatics workflows.
cbc-documentation-templates
Repository for documentation templates.
jupyterfleet
Cohesive utility to deploy and configure a group of AWS instances running Jupyter for teaching
metagenomics-power-analyses-tutorial
Tutorial for doing power analyses for metagenomics.
qckit
Website for qckit, R packages for quality control of genomic sequencing data
refchef
YAML-based genomics reference management.
RSeqAn
SeqAn headers for R
VariantVisualization.jl
Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
Computational Biology Core's Repositories
compbiocore/VariantVisualization.jl
Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
compbiocore/refchef
YAML-based genomics reference management.
compbiocore/compbiocore.github.io
compbiocore/DEseq_workshop_2_2021
compbiocore/poweranalyses
A collection of power analyses done for different sequencing experiments
compbiocore/qcviz-nuxt
QC Visualization App - Built with Nuxt.js
compbiocore/qcdb
QC Database
compbiocore/refchef-ember
Revamped Refchef View Application. Built with Ember and GitHub API. (for Hugo version, check refchef-view repo)
compbiocore/analysis_template
Template for analysis repositories
compbiocore/bootcamp_scrna
compbiocore/cbc-references-refchef
Computational Biology Core List of References for RefChef
compbiocore/ccv_bootcamp_bioinfo
compbiocore/ccv_bootcamp_R
compbiocore/ccv_bootcamp_Reproducibility_R
compbiocore/ccv_bootcamp_RNAseq_2023
compbiocore/covid19_analysis
compbiocore/DSCOV_actions
This repository is for the DSCoV presentation on GitHub Actions
compbiocore/dscov_singlecell_2024
compbiocore/Fedulov_porcine_rrbs
compbiocore/iwong_poweranalysis
compbiocore/NMR-WebApp
compbiocore/NMR-WebApp-inputs
compbiocore/pyscenic_jiatao
compbiocore/refchef-view
RefChef list table web app.
compbiocore/scrna_r_workshop
compbiocore/shallowvariant
ShallowVariant is an attempt to build a child model for the variant caller DeepVariant (for CSCI1470)
compbiocore/slee_poweranalysis
compbiocore/workflow_prototypes_on_OSCAR
compbiocore/workflows_on_OSCAR
compbiocore/workflows_workshop