compbiocore/refchef

Issues

• Similar to indexing - add functionality to have modified versions of the same primary ref

  #47 opened 5 years ago
  0

• md5sum check

  #46 opened 5 years ago
  0

• Add test to check for redundant references

  #45 opened 5 years ago
  0

• git revert functionality

  #44 opened 5 years ago
  0

• BWA and Bowtie2 indexes have the same UUID as the primary reference in some cases.

  #43 opened 5 years ago
  0

• refchef-cook reads the entire master.yaml

  #42 opened 5 years ago
  0

• adding a new.yaml to master.yaml is not appending the master.yaml with the new keys

  #40 opened 5 years ago
  1

• refchef-serve returns a 500 internal server error

  #39 opened 5 years ago
  0

• problems with more than 1 index file

  #35 opened 5 years ago
  1

• conda install does not work (pip install is fine).

  #32 opened 5 years ago
  0

• Issues with refchef-menu c.uuid

  #31 opened 5 years ago
  1

• What is cfg.yaml proper format?

  #30 opened 5 years ago
  2

• refchef-view and standardized metadata should follow genbank metadata

  #29 opened 6 years ago
  1

• check for downloaded references and flip the complete flag

  #21 opened 6 years ago
  1

• refchef-serve

  #20 opened 6 years ago
  0

• argparse to config

  #19 opened 6 years ago
  1

• split git functions

  #18 opened 6 years ago
  1

• hierarchical diagram for data flow

  #17 opened 6 years ago
  0

• handle index and uuids

  #16 opened 6 years ago
  1

• web interface for RefChef menu

  #15 opened 6 years ago
  0

• better handling of path in master.yaml

  #14 opened 6 years ago
  0

• create S3 bucket, add small files for testing, and create test yaml.

  #13 opened 6 years ago
  0

• save config file in a standard location with a standard name

  #12 opened 6 years ago
  0

• Make all raw_input calls a single, separate function

  #11 opened 6 years ago
  1

• Refactor the config file path to use os.path.abspath

  #10 opened 6 years ago
  2

• add documentation for refchef-menu command.

  #9 opened 6 years ago
  0

• add ability to filter multiple fields

  #8 opened 6 years ago
  1

• add regex functionality to table filter

  #7 opened 6 years ago
  0

• create table functions

  #6 opened 6 years ago
  1

• create RefChef-menu script

  #5 opened 6 years ago
  1

• add CLI to `scripts/cook`

  #4 opened 6 years ago
  2

• write tests

  #3 opened 6 years ago
  2

• update code to use GitHub API

  #2 opened 6 years ago
  2

• refactor code to read new yaml format

  #1 opened 6 years ago
  1