Pinned Repositories
bioconductor-workshop-1
bioconductor-workshop-2
bioflows
Bioflows is an easy to use package for running bioinformatics workflows.
cbc-documentation-templates
Repository for documentation templates.
jupyterfleet
Cohesive utility to deploy and configure a group of AWS instances running Jupyter for teaching
metagenomics-power-analyses-tutorial
Tutorial for doing power analyses for metagenomics.
qckit
Website for qckit, R packages for quality control of genomic sequencing data
refchef
YAML-based genomics reference management.
RSeqAn
SeqAn headers for R
VariantVisualization.jl
Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
Computational Biology Core's Repositories
compbiocore/qcdb
QC Database
compbiocore/pyscenic_jiatao
compbiocore/iwong_poweranalysis
compbiocore/slee_poweranalysis
compbiocore/refchef-view
RefChef list table web app.
compbiocore/cbc-hugo-site
Brown's Computational Biology Core Hugo Site
compbiocore/Dennery_scRNA
compbiocore/bioflows
Bioflows is an easy to use package for running bioinformatics workflows.
compbiocore/covid-pipeline
Fork of kantorlab/covid-pipeline
compbiocore/ccv_bootcamp_fnds_bioinformatics_analysis
compbiocore/qcviz_shiny
compbiocore/refchef_parser
Writing a parser to convert csv from request form to yaml
compbiocore/Scaffa
compbiocore/sea_urchin_app1
compbiocore/brodsky_scte
Apply the scTE pipeline to process human cartilage data from Ji et al 2017 and try to identify clusters corresponding to transposable elements, specifically Line1 elements.
compbiocore/NLP_Syllabi_Project
compbiocore/nmrdock
NMR docker image dockerfile
compbiocore/rnaseq_workshop_2021
RNAseq workshop 2021
compbiocore/ccv_bootcamp_python
compbiocore/ccv_bootcamp_julia
compbiocore/tidyverse-workshop
Visualization in R with tidyverse and ggplot2 workshop by CBC
compbiocore/access_genbank
compbiocore/RSeqAn
SeqAn headers for R
compbiocore/BioCookbook.jl
A collection of Julia scripts for bioinformatics in use by CBC
compbiocore/conda-recipes
compbiocore/idep-docs
Documentation for Brown CBC's iDEP implementation
compbiocore/r-workshop-1
Intro to R workshop
compbiocore/dockerfiles
compbiocore/fedulov_rrbs_data
compbiocore/conda-build-images
New repository for conda build docker images