compbiocore/qcdb

Issues

• development from docker image instead of locally

  #54 opened 2 years ago
  0

• Add repo_id to metadata.yaml

  #53 opened 2 years ago
  0

• feat: db_load to run all tool parsers

  #52 opened 2 years ago
  1

• feat: Metadata crawler

  #51 opened 2 years ago
  2

• sra_metadata as standalone function that creates `metadata.yaml` sheet

  #47 opened 2 years ago
  2

• Update qcdb reference table

  #46 opened 2 years ago
  1

• fix tests

  #45 opened 3 years ago
  0

• Basic Statistics

  #43 opened 2 years ago
  1

• Modify DB to not rely on SRA ID as primary key

  #41 opened 3 years ago
  1

• unique constraint for metrics does not work if `read_type=NULL`

  #33 opened 5 years ago
  0

• Parser for picardtools does not work on paired end data correctly

  #30 opened 3 years ago
  1

• some fastqc files don't have tile quality

  #28 opened 5 years ago
  1

• coverage report from tests in travis does not get uploaded to codecov

  #19 opened 6 years ago
  1

• errors in parsing one file leads to dropping all files for that tool

  #18 opened 6 years ago
  0

• Add reference genome to alignment metrics

  #16 opened 6 years ago
  1

• samplemeta needs to be have more fields

  #14 opened 5 years ago
  0

• fix python connection

  #13 opened 6 years ago
  0

• minify json names

  #12 opened 6 years ago
  0

• create pipenv for qcdb

  #11 opened 6 years ago
  0

• Library read type

  #10 opened 5 years ago
  2

• Redundancy check

  #9 opened 6 years ago
  0

• json files

  #8 opened 6 years ago
  1

• sometime in the future: sqlalchemy connections?

  #7 opened 6 years ago
  3

• fastqc_parse parse function

  #6 opened 6 years ago
  1

• fastQCparser

  #5 opened 6 years ago
  3

• get_metadata returns drop_duplicates

  #4 opened 6 years ago
  1

• base_file is over used

  #3 opened 6 years ago
  3

• Class BaseParser

  #2 opened 6 years ago
  1