Section of Computational Biomedicine
Making Translational Bioinformatics Go Faster
Boston, Massachusetts
Pinned Repositories
basespace-cli-scripts
Bash wrapper scripts for working with the BaseSpace command-line interface (CLI)
beatmap
This heatmap *beats* the one you're using by adding comfortably spaced color bars and a color key.
celda
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
enrichR
A hacky little interface to call the Enrichr functional enrichment tool from R.
genome-reference-scripts
Scripts for creating genome references (FASTA, STAR, etc.)
RNA_Seq
Nextflow pipeline for preprocessing RNA sequencing data.
scruff
Single Cell RNA-seq UMI Filtering Facilitator
singleCellTK
Interactively analyze single cell genomic data
tableONE
A simple package for making "Table One" study population tables
TBP
Section of Computational Biomedicine's Repositories
compbiomed/singleCellTK
Interactively analyze single cell genomic data
compbiomed/celda
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
compbiomed/enrichR
A hacky little interface to call the Enrichr functional enrichment tool from R.
compbiomed/RNA_Seq
Nextflow pipeline for preprocessing RNA sequencing data.
compbiomed/basespace-cli-scripts
Bash wrapper scripts for working with the BaseSpace command-line interface (CLI)
compbiomed/beatmap
This heatmap *beats* the one you're using by adding comfortably spaced color bars and a color key.
compbiomed/genome-reference-scripts
Scripts for creating genome references (FASTA, STAR, etc.)
compbiomed/scruff
Single Cell RNA-seq UMI Filtering Facilitator
compbiomed/data-transfer-scripts
Scripts for facilitating or carrying out data transfers
compbiomed/tableONE
A simple package for making "Table One" study population tables
compbiomed/TBP
compbiomed/celda_tutorials
Home of various tutorials and documentation for celda
compbiomed/gsea-cli-scripts
Scripts for running GSEA at the command line
compbiomed/microscopy-image-scripts
Scripts for working with microscopy image files (SVS, etc.)
compbiomed/model-selection
compbiomed/sctk-kubernetes
compbiomed/singleCellTKPlus
Includes extra tools in the singleCellTK framework that are not available in standard repositories
compbiomed/sourceDir