Issues
- 0
setRowNames affects UMAP Clustering
#752 opened by MrModenait - 0
Weird error with reportCellQC function
#751 opened by yingzhang121 - 1
- 1
Prepare for upcoming Seurat v5 release
#720 opened by Gesmira - 1
subsetSCECols: S4Vectors::metadata(inSCE)$seurat$obj: $ operator is invalid for atomic vectors
#743 opened by kkmarkel - 2
- 1
singularity container missing package optparse
#731 opened by JHYSiu - 1
Problem loading docker/singularity image
#734 opened by KarlKaise - 1
Docker image on local server
#736 opened by KarlKaise - 1
runCellQC on multiple samples
#721 opened by cmtom - 1
Issue in loading cellranger files in shiny docker app
#688 opened by athulmenon - 2
- 2
- 2
Size limit for import into Shiny app
#691 opened by apeleraux - 1
The importSTARsolo function does not load the Summary.csv file if using the GeneFull folder instead of the Gene folder
#616 opened by apeleraux - 3
unable to select directory when exporting data
#675 opened by pcbunda - 1
In SCTK Shiny app, inability to import STARsolo outputs from GeneFull folder
#678 opened by apeleraux - 0
fishpond to eds
#611 opened by joshua-d-campbell - 2
Error in runing runBBKNN function
#613 opened by Dragonlongzhilin - 2
Error in SoupX & emptyDrops
#608 opened by XanderChen0530 - 4
Error during runCellQC
#651 opened by elisaudayani - 3
SCTK_runQC.R script produces error
#641 opened by ponomarevsy - 7
Report singularity error
#604 opened by XanderChen0530 - 1
Questions about the pipeline
#635 opened by vwtlin - 3
error in runDropletQC
#607 opened by Dragonlongzhilin - 0
- 4
- 6
importMitoGeneSet function not available
#605 opened by shantanubSanofi - 1
- 5
reportCellQC error
#603 opened by jopeptid - 4
'mitoGeneLocation' not specified
#583 opened by fangpingmu - 9
v2.6.0 not on campbio namespace on dockerhub
#595 opened by GeertvanGeest - 4
- 1
"leiden" option for SNN based clustering
#592 opened by mvfki - 2
runCellQC "decontX" not working
#580 opened by jopeptid - 2
Enchancement: Add SoupX, DIEM and Solo
#432 opened by mbatiuk - 5
Add support for alevin-fry
#579 opened by rob-p - 5
Error in plotPathway(sce, resultName = "VAM_H_CDF", geneset = hallmark, : could not find function "plotPathway"
#571 opened by rpauly - 2
Error at Dimension Reduction under Feature Selection & Dimensionality Reduction
#570 opened by fangpingmu - 2
Shiny app "Label Cell Type" error
#572 opened by fangpingmu - 2
Object 'subsets_mito_percent' not found
#563 opened by fangpingmu - 2
How to import cellranger v3 samples to shiny app
#564 opened by fangpingmu - 1
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘gsva’ for signature ‘"matrix", "NULL"’
#499 opened by rpauly - 2
- 1
useAssay should be raw counts in seuratFindHVG
#467 opened by zhewa - 2
EnrichR does not work
#470 opened by mvfki - 1
Refactor axis labels in violin plots
#420 opened by ykoga07 - 1
`plotLabels` does not work for plotRunPerCellQCResults
#402 opened by zhewa - 1
- 3
replace shiny-directory-input with shinyFiles
#426 opened by fangpingmu