Pinned Repositories
addbioschemas
art-with-r
dirHap
Direct haplotyping from read alignments
geertvangeest.github.io
Personal website
NCCR_SIB_lrRNAseq
containers-introduction-training
Course website "Docker and Singularity for reproducible research: getting started with containers"
NGS-introduction-training
SIB course that introduces analysis of NGS data
NGS-variants-training
GitHub for the SIB courses NGS - Genome variant analysis
single-cell-training
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
training-collection
Collection of bioinformatics training materials
GeertvanGeest's Repositories
GeertvanGeest/addbioschemas
GeertvanGeest/art-with-r
GeertvanGeest/r-docker-cheat-sheet
Cheat sheet for building docker container for R
GeertvanGeest/art-from-code
GeertvanGeest/geertvangeest.github.io
Personal website
GeertvanGeest/automate-gh-issues
GeertvanGeest/AWS-docker-nginx
GeertvanGeest/chatGPT_R
GeertvanGeest/cluster-docs
GeertvanGeest/ELIXIR-TrP-Bioschemas
GeertvanGeest/ELIXIR-TrP-LessonTemplate-MkDocs
Template for ELIXIR Lessons
GeertvanGeest/example-jupyter-book
An example Jupyter Book project integrated with Read the Docs
GeertvanGeest/flowchart_FAIR_SIB
GeertvanGeest/glittr-search-repos
GeertvanGeest/immunology-in-bioinformatics-training
GeertvanGeest/interactive-babynames
GeertvanGeest/learningpath-network
Shiny web app learning paths
GeertvanGeest/pcluster-nextflow
GeertvanGeest/probable-octo-fiesta
GeertvanGeest/quarto-tutorial-final
GeertvanGeest/quarto-tutorial-windows
GeertvanGeest/R-interface-chatGPT
GeertvanGeest/shinylive-r
Example shinylive with WASM
GeertvanGeest/single-cell-training-quarto
GeertvanGeest/template-test
GeertvanGeest/terraform-AWS-teaching
terraform scripts to start teaching instance
GeertvanGeest/test_custom_action
GeertvanGeest/V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
GeertvanGeest/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
GeertvanGeest/zenodo_api_to_cff