Weird error with reportCellQC function
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yingzhang121 commented
Hi, I got the following error message when I tried to run function "reportCellQC":
> reportCellQC(cellSCE)
processing file: CellQC.Rmd
|.......... | 19%
|.................................. | 69%
|....................................... | 78% [DecontX-plot]
Quitting from lines 1024-1060 [DecontX-plot] (CellQC.Rmd)
Error in `as.character()`:
! cannot coerce type 'closure' to vector of type 'character'
Backtrace:
1. singleCellTK (local) metaChecking(DecontXMeta, sample)
So I copied the CellQC.Rmd from this github repository, and ran the knitting with assigning the correct "params" for inSCE object. The code finished without a problem, and you can see it here:
https://zhan2142.s3.msi.umn.edu/Parse_Lee_s47053_QC.html
I don't know why the markdown file worked fine, while the wrapper function "reportCellQC" failed.
My running environment is provided in the "sessionInfo" in the linked html file.