compomics/ms2rescore

Issues

• Logging bug in GUI in debug mode

  #190 opened 2 months ago by RalfG
  2

• pyo3_runtime.PanicException: called `Result::unwrap()` on an `Err` value: NotCentroided

  #193 opened 2 months ago by frankligy
  2

• which column to use for mokapot generated rescoring results?

  #194 opened 2 months ago by frankligy
  0

• Handle None in psm_list['rescoring_features']

  #192 opened 2 months ago by rodvrees
  0

• Uncaught exception in DeepLCFeatureGenerator if not enough peptides for calibration set

  #130 opened 2 months ago by vrkosk
  3

• Improve logging of modification mapping functionality

  #104 opened 2 months ago by RalfG
  1

• Suggestions for Ion mobility MS data

  #100 opened 2 months ago by frankligy
  3

• 'charmap' codec can't encode characters in position XX

  #183 opened 2 months ago by JesusCastano01
  3

• UnicodeEncodeError: 'ascii' codec can't encode characters in position ...

  #185 opened 2 months ago by prvst
  1

• pyopenms DLL issue

  #149 opened 3 months ago by AUldry
  1

• Various issues while processing PeptideShaker mzIdentML results

  #165 opened 3 months ago by ofleitas
  8

• error running rescore - tries to download something?

  #147 opened 3 months ago by Dmorgen
  2

• im2deep not working with the GUI

  #171 opened 3 months ago by AlexandreBurel
  1

• Could not find matching spectra

  #140 opened 3 months ago by JesusCastano01
  2

• Scipy dependency issue in Windows Installer for v3.0.3

  #145 opened 3 months ago by RalfG
  2

• When using Percolator with more than 128 threads, MS2Rescore returns empty pout files

  #117 opened 3 months ago by tivdnbos
  0

• SSL certificate error

  #170 opened 3 months ago by prvst
  4

• MS2PIPFeatureGenerator and DeepLCFeatureGenerator, provide a progress callback

  #150 opened 6 months ago by vrkosk
  1

• DeepLCFeatureGenerator multiprocessing issue when number of processes is more than 1

  #151 opened 6 months ago by vrkosk
  2

• Parameters for rescoring peptidomics data

  #148 opened 4 months ago by Dmorgen
  5

• Command line tool should pass in fasta file to the rescoring engine (mokapot) to enable the use of other named parameters

  #157 opened 4 months ago by MatteoLacki
  2

• Implement better logging for PSM ID to spectrum ID matching

  #158 opened 4 months ago by RalfG
  1

• Config file for maxquant example in v3.0.0-dev4

  #98 opened 4 months ago by veitveit
  1

• MSMS Parsing with MaxQuant

  #136 opened 4 months ago by JesusCastano01
  3

• Prepec modification error: Multiple modifications per site not supported in Peptide Record format.

  #108 opened 4 months ago by NicolasProvencher
  6

• Update DeepLC integration to send PSMList object instead of peprec dataframe

  #113 opened 4 months ago by RalfG
  0

• Add lower-rank filtering option

  #105 opened 4 months ago by RalfG
  1

• MemoryError with input file containing multiple million PSMs (DIA data)

  #146 opened 7 months ago by Pichler98
  0

• Target-decoy competition settings

  #153 opened 5 months ago by MatteoLacki
  1

• Validate that all modifications are resolvable

  #155 opened 5 months ago by RalfG
  0

• Reports of error in `freeze_support` with Windows installer

  #154 opened 5 months ago by RalfG
  0

• Issue with QC report for percolator

  #114 opened 8 months ago by juslm
  0

• Specify custom model directory in MS2PIPFeatureGenerator

  #134 opened 8 months ago by vrkosk
  0

• Model slowly downloaded

  #139 opened 8 months ago by danyunghsu
  2

• Correctly handle peptides with invalid residues (BJOUXZ)

  #106 opened 8 months ago by RalfG
  2

• Fatal pickling exception when using [UNIMOD:nn] identifier in ProForma string

  #128 opened 8 months ago by vrkosk
  7

• Persistent warning about OPENMS_DATA_PATH

  #129 opened 8 months ago by vrkosk
  4

• Add user control for whether models are downloaded automatically

  #135 opened 8 months ago by vrkosk
  2

• Cannot resolve mass for invalid amino acid

  #126 opened 8 months ago by ArthurDeclercq
  1

• Adding peptide n-terminal fixed modification

  #125 opened 8 months ago by XiuyuanChen1
  1

• Cannot resolve mass for modification

  #107 opened 8 months ago by MatteoLacki
  11

• Add feature descriptions to documentation

  #124 opened 8 months ago by Guitou1
  1

• GUI crashes on linux system

  #118 opened 9 months ago by ArthurDeclercq
  1

• ms2rescore graphical user interface

  #116 opened a year ago by DaliJarboui
  1

• Lack of documentation on the command line interface

  #111 opened a year ago by Guitou1
  2

• Support different levels of confidence estimates when using mokapot

  #112 opened a year ago by jonasscheid
  2

• Percolator [WinError 2] The system cannot find the file specified with the .pin

  #109 opened a year ago by NicolasProvencher
  3

• MS-GF+ms2rescore pipeline doesn't run

  #94 opened a year ago by Hassan-1991
  1

• issue with installation

  #93 opened a year ago by Parniyan-M
  2

• Install v3.0.0b4 from Windows .exe, failed to run with "Cannot find XGBoost Library in the candidate path"

  #101 opened a year ago by vrkosk
  1