Segmentation fault (Core dumped)

[abcdtree]

Some of my fastq will raise this error.

Reading fasta file... Done
Segmentation fault (core dumped)

My command line:

awk 'BEGIN{OFS="\n"} /^@/ {getline s; getline a; getline q; if (length(s) >= 150) {print $0,s,a,q}}' 20180124_xxx_v3.2.2_pass.fastq > 20180124_xxx_pass_sorted.filtered.fastq
~/Software/RATTLE/rattle cluster -i 20180124_xxx_pass_sorted.filtered.fastq --fastq -o ./20180124_xxx

Any reason in your mind?

Thank you

[novikk]

Hi,
I'd like to debug this problem but without having the fastq file it's going to be really hard. Is it possible that you send me the file? Or maybe a chunk of the file that also causes the issue.

You can contact me at ivan.delarubia@upf.edu

Thanks

[novikk]

Fixed on 0c21542