comprna/RATTLE

Issues

• how to compile statically linked?

  #56 opened 24 days ago by fishpm-anu
  0

• Failed cluster extraction on the server

  #55 opened a month ago by officialnaturalist
  1

• Using intermediate output for RNA-Bloom2 transcriptome assembly?

  #54 opened a month ago by patrickaoude
  1

• Segmentation fault (core dumped)

  #26 opened 3 years ago by BJ-Chen-Eric
  14

• Visualisation of cluster.out

  #53 opened 4 months ago by ddrazoh
  0

• Losing clusters during correction stage

  #52 opened 7 months ago by mjudd8
  1

• Cannot call ./rattle

  #16 opened 4 years ago by huangzk20
  4

• ERROR when installing RATTLE

  #40 opened 2 years ago by angus821
  13

• How can I cluster multiple Nanopore sequencing data together?

  #51 opened 9 months ago by sheevivian
  1

• rattle correction step giving error

  #50 opened a year ago by dvirdi01
  9

• Segmentation Fault in Correcting Step

  #18 opened 4 years ago by qhauck16
  20

• rattle cluster_summary command not working

  #49 opened a year ago by dvirdi01
  1

• Using RATTLE on illumina and nanopore reads

  #48 opened a year ago by phrh
  5

• parameters for stranded cDNA

  #41 opened 2 years ago by alexyfyf
  5

• Cannot build recent RATTLE versions

  #47 opened a year ago by claumer
  2

• Memory error: Killed?

  #46 opened a year ago by CWYuan08
  3

• read to transcript relationship in final polished transcriptome.fq

  #45 opened a year ago by alexyfyf
  2

• Use own clustering

  #13 opened 4 years ago by nadiadavidson
  1

• Unable to install in ubuntu 22 version , facing error during build

  #44 opened a year ago by krishnakazama
  5

• No options to convert

  #43 opened 2 years ago by FlintMitchell
  3

• correct.cpp errors: 'createAlignmentEngine' & 'createGraph' not a member of 'spoa'

  #42 opened 2 years ago by josiah-liew
  2

• Illegal instruction error on RATTLE correct

  #39 opened 2 years ago by Csam488
  7

• How to proceed with the output after polishing the data?

  #38 opened 2 years ago by yeroslaviz
  6

• No output file generated!!!

  #24 opened 2 years ago by Amrita-Vijay
  14

• creating output dir

  #19 opened 3 years ago by andreirozanski
  1

• mapping isoform transcriptome to genes?

  #21 opened 2 years ago by xuesoso
  2

• main.cpp error

  #37 opened 2 years ago by Threeman8
  2

• Segmentation fault due to N containing transcripts

  #36 opened 2 years ago by abs-yy
  2

• Error during correct

  #34 opened 2 years ago by bauerlev
  1

• Error during rattle correct

  #29 opened 3 years ago by lananh-ngn
  1

• Support for Windows-style linebreaks

  #33 opened 3 years ago by jjcrawford
  1

• If -iso-score-threshold value is given, no Clustering.

  #32 opened 3 years ago by jkbenotmane
  2

• Error during compilation

  #31 opened 3 years ago by kmnip
  4

• error during rattle correct

  #30 opened 3 years ago by glopatriello
  1

• cannot create std::vector larger than max_size()

  #14 opened 4 years ago by cnk113
  7

• Compile error 'is not a member of std'

  #22 opened 3 years ago by dn-ra
  5

• Combine IsoSeq and transcripts from de novo annotation?

  #28 opened 3 years ago by Adamtaranto
  1

• Stranding Information Format for --rna Clustering

  #23 opened 3 years ago by danphillips28
  1

• Correction step produces wrong fastq formatted files.

  #27 opened 3 years ago by aswathyseb
  3

• Memory issue

  #25 opened 4 years ago by shernadi
  11

• error

  #20 opened 4 years ago by yi1873
  0

• Error when try to run ./rattle

  #17 opened 4 years ago by Kirovez
  6

• Let Makefile use user defined compiler

  #6 opened 4 years ago by Shians
  0

• Segmentation fault (core dumped)

  #15 opened 4 years ago by pedronachtigall
  0

• question about the min_reads during correct step

  #12 opened 4 years ago by huangziyan11111
  0

• running error with "terminate called after throwing an instance of 'std::bad_alloc'"

  #11 opened 4 years ago by huangziyan11111
  4

• many error when run make (such as undefined reference...)

  #10 opened 5 years ago by huangziyan11111
  1

• ./build.sh get CMake Error

  #9 opened 5 years ago by huangziyan11111
  2

• Error when compiling

  #8 opened 5 years ago by NatPRoach
  3

• Segmentation fault (Core dumped)

  #7 opened 5 years ago by abcdtree
  2