Computational RNA Biology group

Around the world

Pinned Repositories

CHEUI
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
Language:C++32 13 422
ISOTOPE
ISOform-guided prediction of epiTOPEs in cancer
Language:Python13 5 56
METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model
Language:R74 14 3319
MoSEA
Motif Scan and Enrichment Analysis (MoSEA)
Language:Python16 4 610
ORQAS
ORF Quantification pipeline for Alternative Splicing
Language:Python15 5 36
R2Dtool
Analyse RNA feature distributions.
Language:Jupyter Notebook13 5 34
radian
Nanopore direct RNA basecaller
Language:Python11 4 42
RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Language:C++56 9 5410
riser
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
Language:Python10 4 23
SUPPA
SUPPA: Fast quantification of splicing and differential splicing
Language:Python258 14 18261

Computational RNA Biology group's Repositories

comprna/SUPPA
SUPPA: Fast quantification of splicing and differential splicing
Language:Python258 14 18261
comprna/METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model
Language:R74 14 3319
comprna/RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Language:C++56 9 5410
comprna/CHEUI
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
Language:C++32 13 422
comprna/MoSEA
Motif Scan and Enrichment Analysis (MoSEA)
Language:Python16 4 610
comprna/ORQAS
ORF Quantification pipeline for Alternative Splicing
Language:Python15 5 36
comprna/ISOTOPE
ISOform-guided prediction of epiTOPEs in cancer
Language:Python13 5 56
comprna/R2Dtool
Analyse RNA feature distributions.
Language:Jupyter Notebook13 5 34
comprna/radian
Nanopore direct RNA basecaller
Language:Python11 4 42
comprna/riser
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
Language:Python10 4 23
comprna/reorientexpress
Transcriptome long-read orientation with Deep Learning
Language:Python9 5 44
comprna/Junckey
Collection of scripts for computing PSI of junction clusters
Language:Python7 4 13
comprna/ePydoor
Epitope discovery pipeline for RNA-seq
Language:Python6 6 01
comprna/MIRA
Mutation Identification for RNA Alterations
Language:Python6 4 22
comprna/LatentEvents
Latent Dirichlet Allocation on alternative splicing events.
Language:Python5 6 01
comprna/SUPPA_supplementary_data
Supplementary data
Language:R5 3 37
comprna/CREOLE
Reference-free identification of open reading frames and encoded proteins from nanopore transcriptomic long reads
Language:Python2 5 01
comprna/humming
Tools for the comparison of long-read mappings to a genome reference and annotations
Language:Perl2 7 12
comprna/Splicing_Browser
Browser to present splicing events and junctions arround the genome
Language:R2 5 01
comprna/CHEUI-public
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
1 4 1
comprna/FLIPPER
Read orientation and full transcript detection from Nanopore cDNA/RNA sequencing
Language:C++1 6 01
comprna/SeRPeNT
Language:C1 5 01
comprna/SeRPeNT-analysis
Language:Perl1 5 01
comprna/SVM-BPfinder-3M
Language:Python1 3 0
comprna/calindel
tool to calculate substitutions, indels etc
Language:Python0 6 01
comprna/risk_model_app
Shiny App to predict a risk score for infant B-ALL patients
Language:R0 5 00
comprna/drug_screening
Language:R3 0
comprna/ISOTOPE_supplementary
Supplementary repository for file storage
6 0
comprna/SVM-BPfinder
Language:Python6 11
comprna/txannotate
4 0