Pinned Repositories
CHEUI
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
ISOTOPE
ISOform-guided prediction of epiTOPEs in cancer
METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model
MoSEA
Motif Scan and Enrichment Analysis (MoSEA)
ORQAS
ORF Quantification pipeline for Alternative Splicing
R2Dtool
Analyse RNA feature distributions.
radian
Nanopore direct RNA basecaller
RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
riser
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
SUPPA
SUPPA: Fast quantification of splicing and differential splicing
Computational RNA Biology group's Repositories
comprna/SUPPA
SUPPA: Fast quantification of splicing and differential splicing
comprna/METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model
comprna/RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
comprna/CHEUI
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
comprna/MoSEA
Motif Scan and Enrichment Analysis (MoSEA)
comprna/ORQAS
ORF Quantification pipeline for Alternative Splicing
comprna/R2Dtool
Analyse RNA feature distributions.
comprna/ISOTOPE
ISOform-guided prediction of epiTOPEs in cancer
comprna/radian
Nanopore direct RNA basecaller
comprna/riser
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
comprna/reorientexpress
Transcriptome long-read orientation with Deep Learning
comprna/Junckey
Collection of scripts for computing PSI of junction clusters
comprna/ePydoor
Epitope discovery pipeline for RNA-seq
comprna/MIRA
Mutation Identification for RNA Alterations
comprna/LatentEvents
Latent Dirichlet Allocation on alternative splicing events.
comprna/SUPPA_supplementary_data
Supplementary data
comprna/CREOLE
Reference-free identification of open reading frames and encoded proteins from nanopore transcriptomic long reads
comprna/humming
Tools for the comparison of long-read mappings to a genome reference and annotations
comprna/Splicing_Browser
Browser to present splicing events and junctions arround the genome
comprna/CHEUI-public
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
comprna/FLIPPER
Read orientation and full transcript detection from Nanopore cDNA/RNA sequencing
comprna/SeRPeNT
comprna/SeRPeNT-analysis
comprna/SVM-BPfinder-3M
comprna/calindel
tool to calculate substitutions, indels etc
comprna/risk_model_app
Shiny App to predict a risk score for infant B-ALL patients
comprna/drug_screening
comprna/ISOTOPE_supplementary
Supplementary repository for file storage
comprna/SVM-BPfinder
comprna/txannotate