connectome-neuprint/neuPrint

Issues

• How to find where a neuron's cell body resides?

  #67 opened 2 years ago by Prateek1410
  0

• What is the exact definition/meaning of skeleton segments (and their radius)? How are they obtained?

  #60 opened 3 years ago by lukablagoje
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• Data model for ROI information is awkward

  #58 opened 4 years ago by stuarteberg
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• Convert to new json format

  #45 opened 3 years ago by nneubarth
  0

• Does mergeNeuronsFromJson work after the latest neuPrint update?

  #49 opened 6 years ago by umayaml
  0

• Add procedure for creating a generic collection of items to be added to neurons (e.g. mitochondria)

  #47 opened 6 years ago by nneubarth
  1

• Add necessary dvid information to json to be loaded into database

  #33 opened 6 years ago by nneubarth
  1

• create public version of neuprint-procedures that includes those necessary for public release

  #35 opened 6 years ago by nneubarth
  1

• update pgm specs to include weightHP, connection set roiInfo

  #44 opened 6 years ago by nneubarth
  0

• markdown files with details about fib25/mb6 to be used in neuprintexplorer

  #46 opened 6 years ago by nneubarth
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• consider adding roi breakdown on connection set nodes

  #27 opened 6 years ago by nneubarth
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• add method for deleting type from neuron

  #43 opened 6 years ago by nneubarth
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• Add API for incrementally adding and deleting synapses

  #40 opened 6 years ago by nneubarth
  9

• Add developer instructions

  #39 opened 6 years ago by nneubarth
  0

• update properties endpoint should accept "type" as property

  #38 opened 6 years ago by nneubarth
  0

• Add ability to delete soma from neuron while updating properties

  #41 opened 6 years ago by nneubarth
  1

• API for deleting status, name, and soma

  #42 opened 6 years ago by nneubarth
  0

• Add status definitions for mb6 and fib25 to json for storing on meta node

  #34 opened 6 years ago by nneubarth
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• Skip unnecessary indices depending on nature of load

  #36 opened 6 years ago by nneubarth
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• Add status definitions to meta json

  #37 opened 6 years ago by nneubarth
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• Experimental features used for hemibrain should not be loaded by default. Add flags for adding these features if desired

  #32 opened 6 years ago by nneubarth
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• indicate high precision synapses/weights

  #28 opened 6 years ago by nneubarth
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• consider adding/removing rois incrementally

  #31 opened 6 years ago by nneubarth
  1

• update to Neo4J 3.5

  #21 opened 6 years ago by nneubarth
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• automate incremental updates?

  #30 opened 6 years ago by nneubarth
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• store ROI meshes as blobs

  #29 opened 6 years ago by nneubarth
  0

• represent potential merge relationships in graph

  #26 opened 6 years ago by nneubarth
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• Data release

  #19 opened 6 years ago by tomdolafi
  0

• add mutation ids and uuids to skeletons when updated

  #25 opened 6 years ago by nneubarth
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• Improve documentation

  #24 opened 6 years ago by nneubarth
  1

• investigate speeding up load via user procedures

  #16 opened 6 years ago by nneubarth
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• speed up user procedures by using api interfaces

  #15 opened 6 years ago by nneubarth
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• support bodies without synapses that have soma

  #23 opened 6 years ago by nneubarth
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• allow deletion of status/name

  #22 opened 6 years ago by nneubarth
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• add directionality to connection set relationships

  #20 opened 6 years ago by nneubarth
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• Text index

  #18 opened 6 years ago by tomdolafi
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• Spatial index

  #17 opened 6 years ago by tomdolafi
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• Provide function to get centroid of body (neuroglancer)

  #14 opened 6 years ago by nneubarth
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• Live updates from DVID

  #13 opened 6 years ago by nneubarth
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• meta node should store neuroglancer info

  #12 opened 6 years ago by nneubarth
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• MetaNode UUID updated following live updates

  #11 opened 6 years ago by nneubarth
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• Trigger labeling with :Neuron if neuron is given a name or status by a proofreader

  #9 opened 6 years ago by nneubarth
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• Add and remove neuron procedures

  #7 opened 6 years ago by nneubarth
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• Remove :roi labels and replace with indexed boolean properties

  #10 opened 6 years ago by nneubarth
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• Change :Neuron to :Neuron and :Segment

  #8 opened 6 years ago by nneubarth
  0

• add arbitrary properties during load

  #3 opened 7 years ago by nneubarth
  0

• application of time stamp behaves inconsistently

  #6 opened 6 years ago by nneubarth
  0

• For ROI connectivity table, freeze the first column and first row

  #4 opened 7 years ago by takemuras
  1

• Filter ROIs in ROI connectivity table

  #5 opened 7 years ago by takemuras
  1

• add timestamps to nodes using neo4j triggers

  #2 opened 7 years ago by nneubarth
  0