conorcamplisson/rosalind_workbook

Jupyter notebook templates for the bioinformatics problems on rosalind.info and a corresponding conda environment

Rosalind Workbook

Jupyter notebook templates by topic for the bioinformatics problems on rosalind.info and a corresponding conda environment.

Getting Started

1. Ensure you have either Anaconda or Miniconda installed.

2. Clone this repository:

$ git clone git@github.com:conorcamplisson/rosalind_workbook.git

2. Create the conda environment:

$ cd rosalind_workbook/
$ conda env create -f environment.yml

3. Activate the conda environment:

$ source activate rosalind

4. Run the jupyter notebook server:

$ jupyter notebook

6. In your web browser, navigate to the jupyter notebook server web interface and open the rosalind_workbook/ directory.

7. Open the notebook for your chosen topic, and run the import cell before working on the problems.