If the Scomatic could provide the variant allele frequency of unique cell

Question

If the Scomatic could provide the variant allele frequency of unique cell

Opened this issue 5 months ago · 0 comments

Thank you for making this wonderful tool. I have used this pipeline and wanted to use the output for clone analysis by using software like Cardelino. I found there was no information about the variant allele frequency of unique cell in the output of SingleCellGenotype.py. If I can calculate this from the other output of Scomatic ? Thanks very much!

Best wishes

Huan