Cortes-Ciriano lab (EMBL-EBI)

CancerGenomicsCourse_EMBL-EBI

ClonalSim

DeMethify

DeMethify is a suite of methylation deconvolution algorithms that mainly revolves around adapted non-negative matrix factorization, offering a versatile toolbox for heterogeneous methylation data.

MMRd_immunogenicity

osteosarcoma_evolution

Code for the analysis of the mechanisms underpinning osteosarcoma genome complexity and evolution

ReConPlot

savana

Somatic structural variant caller for long-read data

SComatic

A tool for detecting somatic variants in single cell data

TelFusDetector

telomere_fusions

Code to call telomere fusions using DNA sequencing data

cortes-ciriano-lab/SComatic

A tool for detecting somatic variants in single cell data

cortes-ciriano-lab/savana

Somatic structural variant caller for long-read data

cortes-ciriano-lab/ReConPlot

cortes-ciriano-lab/telomere_fusions

Code to call telomere fusions using DNA sequencing data

cortes-ciriano-lab/TelFusDetector

cortes-ciriano-lab/CancerGenomicsCourse_EMBL-EBI

cortes-ciriano-lab/ClonalSim

cortes-ciriano-lab/DeMethify

DeMethify is a suite of methylation deconvolution algorithms that mainly revolves around adapted non-negative matrix factorization, offering a versatile toolbox for heterogeneous methylation data.

cortes-ciriano-lab/MMRd_immunogenicity

cortes-ciriano-lab/lta-analysis

cortes-ciriano-lab/ont_fb-inv_artefacts

Method to estimate the rate of fold-back inversion artefacts in ONT sequencing data

cortes-ciriano-lab/osteosarcoma_evolution

Code for the analysis of the mechanisms underpinning osteosarcoma genome complexity and evolution

cortes-ciriano-lab/R_utilities

R common ggplot2 theme and popular colour palettes for lab usage