Pinned Repositories
CancerGenomicsCourse_EMBL-EBI
ClonalSim
DeMethify
DeMethify is a partial-reference based methylation deconvolution algorithm that uses a weighted constrained version of an iteratively optimized negative matrix factorization algorithm.
MMRd_immunogenicity
osteosarcoma_evolution
Code for the analysis of the mechanisms underpinning osteosarcoma genome complexity and evolution
ReConPlot
savana
Somatic structural variant caller for long-read data
SComatic
A tool for detecting somatic variants in single cell data
TelFusDetector
telomere_fusions
Code to call telomere fusions using DNA sequencing data
Cortes-Ciriano lab (EMBL-EBI)'s Repositories
cortes-ciriano-lab/SComatic
A tool for detecting somatic variants in single cell data
cortes-ciriano-lab/savana
Somatic structural variant caller for long-read data
cortes-ciriano-lab/ReConPlot
cortes-ciriano-lab/telomere_fusions
Code to call telomere fusions using DNA sequencing data
cortes-ciriano-lab/CancerGenomicsCourse_EMBL-EBI
cortes-ciriano-lab/ClonalSim
cortes-ciriano-lab/DeMethify
DeMethify is a partial-reference based methylation deconvolution algorithm that uses a weighted constrained version of an iteratively optimized negative matrix factorization algorithm.
cortes-ciriano-lab/MMRd_immunogenicity
cortes-ciriano-lab/TelFusDetector
cortes-ciriano-lab/osteosarcoma_evolution
Code for the analysis of the mechanisms underpinning osteosarcoma genome complexity and evolution
cortes-ciriano-lab/R_utilities
R common ggplot2 theme and popular colour palettes for lab usage
cortes-ciriano-lab/ont_fb-inv_artefacts
Method to estimate the rate of fold-back inversion artefacts in ONT sequencing data