cortex-lab/phy

Can't create FeatureViews with Kilosort4 output.

gkBCCN opened this issue · 1 comments

I've tested Kilosort 4 with multiple datasets, including the sample data in the Kilosort 4 basic tutorial. For all datasets, Phy2 cannot open the FeatureView, the TemplateFeatureView, nor the feature amplitudes in AmplitudeView. It seems to otherwise work fine.

The python version in the phy2 environment is < 3.12 (occurs for both 3.9 and 3.11).
The problem does not occur for Kilosort 2.5 output.

I was able to get FeatureView to work by using: phy extract-waveforms params.py in the console and reopening phy (see #1145). Feature AmplitudeView and TemplateFeatureView still don't work.