electrophysiology

There are 255 repositories under electrophysiology topic.

  • sccn/eeglab

    EEGLAB is an open source signal processing environment for electrophysiological signals running on Matlab and developed at the SCCN/UCSD

    Language:MATLAB55527685238

  • SpikeInterface/spikeinterface

    A Python-based module for creating flexible and robust spike sorting pipelines.

    Language:Python447251.1k167
  • Kilosort

    MouseLand/Kilosort

    Fast spike sorting with drift correction for up to a thousand channels

    Language:Python41929657222

  • brainstorm-tools/brainstorm3

    Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology

    Language:MATLAB36230193158

  • fooof-tools/fooof

    Parameterizing neural power spectra into periodic & aperiodic components.

    Language:Python3432718792

  • openlists/ElectrophysiologyData

    A list of openly available datasets in (mostly human) electrophysiology.

    33634961

  • cortex-lab/phy

    phy: interactive visualization and manual spike sorting of large-scale ephys data

    Language:Python302281.1k154
  • BluePyOpt

    BlueBrain/BluePyOpt

    Blue Brain Python Optimisation Library

    Language:Python195198295

  • NeuralEnsemble/elephant

    Elephant is the Electrophysiology Analysis Toolkit

    Language:Python1871615992
  • NeuroRA

    ZitongLu1996/NeuroRA

    A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)

    Language:Python1546430

  • Eden-Kramer-Lab/spectral_connectivity

    Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

    Language:Python12153840

  • SpikeInterface/spikeextractors

    Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

    Language:Python1179048

  • Chaste/Chaste

    Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

    Language:C++1151613955

  • sccn/liblsl

    C++ lsl library for multi-modal time-synched data transmission over the local network

    Language:C++1071210863

  • m-beau/NeuroPyxels

    NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.

    Language:Jupyter Notebook10133322

  • AllenInstitute/ecephys_spike_sorting

    Modules for processing extracellular electrophysiology data from Neuropixels probes

    Language:Python98165687

  • swharden/pyABF

    pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

    Language:Jupyter Notebook981911133

  • openlists/ElectrophysiologySoftware

    A list of openly available software tools for (mostly human) electrophysiology.

    938218
  • CellExplorer

    petersenpeter/CellExplorer

    CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

    Language:MATLAB8994454

  • LorenFrankLab/spyglass

    Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

    Language:Jupyter Notebook801149139

  • jonescompneurolab/hnn

    The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

    Language:Python781512922
  • eFEL

    BlueBrain/eFEL

    Electrophys Feature Extraction Library

    Language:Python65179938

  • JanCBrammer/biopeaks

    A graphical user interface for feature extraction from heart- and breathing biosignals.

    Language:Python603225

  • Gabrock94/Pysiology

    A Python package for physyological's signals processing

    Language:Python5810177

  • open-ephys/acquisition-board

    Hardware interface for streaming up to 512 channels of neural data via USB

    Language:PostScript50152329

  • jonnew/Oat

    Real-time position tracker for behavioral research

    Language:C++49112419

  • SpikeInterface/spiketoolkit

    Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.

    Language:Python499031

  • rob-luke/Neuroimaging.jl

    Neuroimaging in Julia

    Language:Julia4865911

  • nelpy/nelpy

    Neuroelectrophysiology object model and data analysis in Python.

    Language:Python461029724

  • jniediek/combinato

    Automatic spike sorting, cluster visualization, spike sorting GUIs

    Language:Python39156514

  • INCF/neuroshapes

    Open schemas for F.A.I.R. neuroscience data

    Language:Python382110125

  • NeurophysVis/SpectraVis

    An interactive web-based neuroscience app for analyzing task-related functional networks over time and frequency

    Language:JavaScript3874211
  • Pinpoint

    VirtualBrainLab/Pinpoint

    Multi-probe trajectory planning in an intuitive 3D environment

    Language:C#3825613
  • braintime

    sandervanbree/braintime

    Brain Time Toolbox: Warp electrophysiological data from clock time to brain time and analyze the dynamic neural patterns of cognitive processes.

    Language:MATLAB37236

  • AllenInstitute/neuroglia

    a Python machine learning library for neurophysiology data

    Language:Python3619467

  • olafdimigen/eye-eeg

    EYE-EEG toolbox for combining eye-tracking & EEG

    Language:MATLAB3551311