cpwebster
PhD candidate in Evolutionary Biology Research area: Palm genetic diversity
Arizona State UniversityTempe, AZ
Pinned Repositories
FAIR_test
Seminar 20240523
principal_components
A series of documents that call VCFtools (Danecek et al., 2011) and Plink 1.9 beta to calculate principal components for a given VCF and plot the results.
run_admixture
A series of scripts that calculate and plot admixture and cross validation statistics for K=1-15.
test_FAIR
VCF_quality_filter
The following scripts and commands calculate and display statistics for a raw VCF, then filters the VCF for quality, depth, and missingness at given thresholds.
webster_thesis
Scripts developed for parsing and analyzing genetic variation in a specific gene family with VCFs and FASTAs.
rgeoboundaries
R client to geoBoundaries: A Political Administrative Boundaries Dataset -
cpwebster's Repositories
cpwebster/principal_components
A series of documents that call VCFtools (Danecek et al., 2011) and Plink 1.9 beta to calculate principal components for a given VCF and plot the results.
cpwebster/run_admixture
A series of scripts that calculate and plot admixture and cross validation statistics for K=1-15.
cpwebster/FAIR_test
Seminar 20240523
cpwebster/test_FAIR
cpwebster/VCF_quality_filter
The following scripts and commands calculate and display statistics for a raw VCF, then filters the VCF for quality, depth, and missingness at given thresholds.
cpwebster/webster_thesis
Scripts developed for parsing and analyzing genetic variation in a specific gene family with VCFs and FASTAs.