cpwebster

cpwebster's Stars

• MorrellLAB/File_Conversions

  Scripts to convert between file formats for various analyses

  Language:Python145

• ncbi/egapx

  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation

  Language:Nextflow755

• marqueda/SFS-scripts

  A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files

  Language:Python204

• shenglin-liu/vcf2sfs

  R functions for generating site frequency spectra (SFS) from a VCF file.

  Language:R278

• isaacovercast/easySFS

  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis

  Language:Python12623

• nebulae-co/colmaps

  colmaps

  Language:R269

• xiaoming-liu/stairway-plot-v2

  The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequence data.

  Language:Java314

• abacus-gene/paml

  PAML is a program package for model fitting and phylogenetic tree reconstruction using DNA and protein sequence data. Please report only **technical issues** on this repository (e.g., compiling, programs abort or do not run at all, etc.). Problems with input data and general questions should be posted at https://groups.google.com/g/pamlsoftware?pli

  Language:C11820

• YuLab-SMU/scatterpie

  :art: scatter pie plot

  Language:R6016

• valentinitnelav/plotbiomes

  R package for plotting Whittaker biomes with ggplot2

  Language:R349

• rambaut/figtree

  Automatically exported from code.google.com/p/figtree

  Language:Java387105

• smirarab/ASTRAL

  Accurate Species TRee ALgorithm

  Language:Java23768

• kr-colab/diploSHIC

  feature-based deep learning for the identification of selective sweeps

  Language:Python5014

• chasewnelson/OLGenie

  Program for estimating dN/dS in overlapping genes (OLGs)

  Language:Perl132

• ddarriba/jmodeltest2

  Automatically exported from code.google.com/p/jmodeltest2

  Language:Java7547

• stamatak/standard-RAxML

  Language:C329193

• edgardomortiz/vcf2phylip

  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

  Language:Python28985

• ksamuk/pixy

  Software for painlessly estimating average nucleotide diversity within and between populations

  Language:Python11614

• simonhmartin/genomics_general

  General tools for genomic analyses.

  Language:Python33893